Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2971 and Dsui_2972 are separated by 106 nucleotides Dsui_2972 and Dsui_2973 are separated by 5 nucleotides Dsui_2973 and Dsui_2974 are separated by 4 nucleotides
Dsui_2971: Dsui_2971 - putative esterase of the alpha-beta hydrolase superfamily, at 3,176,667 to 3,177,560
_2971
Dsui_2972: Dsui_2972 - leucyl/phenylalanyl-tRNA--protein transferase, at 3,177,667 to 3,178,383
_2972
Dsui_2973: Dsui_2973 - putative arginyl-tRNA:protein arginylyltransferase, at 3,178,389 to 3,179,162
_2973
Dsui_2974: Dsui_2974 - putative iron-regulated membrane protein, at 3,179,167 to 3,180,438
_2974
Position (kb)
3178
3179
3180 Strain fitness (log2 ratio)
-2
-1
0
1 at 3177.403 kb on - strand, within Dsui_2971 at 3177.432 kb on - strand, within Dsui_2971 at 3177.632 kb on - strand at 3177.637 kb on - strand at 3177.643 kb on - strand at 3177.680 kb on - strand at 3177.834 kb on + strand, within Dsui_2972 at 3177.834 kb on - strand at 3177.839 kb on + strand, within Dsui_2972 at 3177.864 kb on - strand, within Dsui_2972 at 3177.922 kb on + strand, within Dsui_2972 at 3177.955 kb on - strand at 3178.163 kb on + strand, within Dsui_2972 at 3178.233 kb on + strand, within Dsui_2972 at 3178.241 kb on + strand, within Dsui_2972 at 3178.241 kb on + strand, within Dsui_2972 at 3178.441 kb on - strand at 3178.457 kb on - strand at 3178.486 kb on + strand, within Dsui_2973 at 3178.726 kb on + strand, within Dsui_2973 at 3178.936 kb on + strand, within Dsui_2973 at 3178.969 kb on + strand, within Dsui_2973 at 3179.151 kb on + strand at 3179.182 kb on + strand at 3179.237 kb on - strand at 3179.406 kb on + strand, within Dsui_2974 at 3179.429 kb on - strand, within Dsui_2974 at 3179.509 kb on - strand, within Dsui_2974 at 3179.509 kb on - strand, within Dsui_2974 at 3179.612 kb on - strand, within Dsui_2974 at 3179.625 kb on - strand, within Dsui_2974 at 3179.637 kb on + strand, within Dsui_2974 at 3179.734 kb on + strand at 3179.766 kb on + strand, within Dsui_2974 at 3179.856 kb on - strand, within Dsui_2974 at 3179.941 kb on + strand, within Dsui_2974 at 3179.941 kb on + strand, within Dsui_2974 at 3180.019 kb on - strand at 3180.019 kb on - strand at 3180.057 kb on + strand, within Dsui_2974 at 3180.057 kb on + strand at 3180.071 kb on - strand, within Dsui_2974
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,177,403 - Dsui_2971 0.82 -1.5 3,177,432 - Dsui_2971 0.86 -1.2 3,177,632 - +0.8 3,177,637 - +0.8 3,177,643 - +0.8 3,177,680 - +0.8 3,177,834 + Dsui_2972 0.23 -0.5 3,177,834 - +0.8 3,177,839 + Dsui_2972 0.24 +0.8 3,177,864 - Dsui_2972 0.27 -0.8 3,177,922 + Dsui_2972 0.36 -0.2 3,177,955 - -0.8 3,178,163 + Dsui_2972 0.69 -0.4 3,178,233 + Dsui_2972 0.79 +0.0 3,178,241 + Dsui_2972 0.80 -1.1 3,178,241 + Dsui_2972 0.80 -0.2 3,178,441 - +0.8 3,178,457 - +0.8 3,178,486 + Dsui_2973 0.13 -0.7 3,178,726 + Dsui_2973 0.44 +0.5 3,178,936 + Dsui_2973 0.71 -0.5 3,178,969 + Dsui_2973 0.75 +0.0 3,179,151 + -1.2 3,179,182 + -1.9 3,179,237 - +0.8 3,179,406 + Dsui_2974 0.19 -2.5 3,179,429 - Dsui_2974 0.21 -0.2 3,179,509 - Dsui_2974 0.27 -0.2 3,179,509 - Dsui_2974 0.27 -2.2 3,179,612 - Dsui_2974 0.35 -1.5 3,179,625 - Dsui_2974 0.36 -0.8 3,179,637 + Dsui_2974 0.37 +0.8 3,179,734 + +0.8 3,179,766 + Dsui_2974 0.47 +0.8 3,179,856 - Dsui_2974 0.54 -0.2 3,179,941 + Dsui_2974 0.61 +0.8 3,179,941 + Dsui_2974 0.61 -1.8 3,180,019 - +0.8 3,180,019 - +0.8 3,180,057 + Dsui_2974 0.70 -1.8 3,180,057 + +0.8 3,180,071 - Dsui_2974 0.71 +0.8
Or see this region's nucleotide sequence