Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2952 and Dsui_2953 are separated by 8 nucleotides Dsui_2953 and Dsui_2954 are separated by 257 nucleotides
Dsui_2952: Dsui_2952 - outer membrane porin, OprD family, at 3,159,978 to 3,161,300
_2952
Dsui_2953: Dsui_2953 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,161,309 to 3,162,703
_2953
Dsui_2954: Dsui_2954 - acyl-CoA hydrolase, at 3,162,961 to 3,163,830
_2954
Position (kb)
3161
3162
3163 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3160.311 kb on - strand, within Dsui_2952 at 3160.322 kb on - strand at 3160.364 kb on + strand at 3160.368 kb on - strand, within Dsui_2952 at 3160.378 kb on - strand, within Dsui_2952 at 3160.521 kb on + strand, within Dsui_2952 at 3160.539 kb on - strand, within Dsui_2952 at 3160.570 kb on - strand, within Dsui_2952 at 3160.723 kb on + strand at 3160.733 kb on + strand at 3160.814 kb on - strand, within Dsui_2952 at 3160.826 kb on + strand at 3160.834 kb on - strand, within Dsui_2952 at 3160.834 kb on - strand, within Dsui_2952 at 3160.931 kb on - strand, within Dsui_2952 at 3160.983 kb on - strand, within Dsui_2952 at 3161.042 kb on - strand, within Dsui_2952 at 3161.054 kb on - strand at 3161.108 kb on - strand, within Dsui_2952 at 3161.181 kb on - strand at 3161.187 kb on - strand at 3161.276 kb on - strand at 3161.276 kb on - strand at 3161.430 kb on + strand at 3161.660 kb on - strand, within Dsui_2953 at 3161.734 kb on - strand, within Dsui_2953 at 3161.759 kb on - strand, within Dsui_2953 at 3161.831 kb on + strand at 3161.846 kb on - strand, within Dsui_2953 at 3161.856 kb on - strand, within Dsui_2953 at 3161.856 kb on - strand, within Dsui_2953 at 3161.910 kb on - strand, within Dsui_2953 at 3161.971 kb on - strand, within Dsui_2953 at 3161.971 kb on - strand, within Dsui_2953 at 3161.978 kb on - strand, within Dsui_2953 at 3162.028 kb on + strand at 3162.033 kb on - strand, within Dsui_2953 at 3162.118 kb on + strand at 3162.292 kb on - strand, within Dsui_2953 at 3162.460 kb on + strand at 3162.528 kb on - strand, within Dsui_2953 at 3162.533 kb on + strand at 3162.588 kb on + strand at 3162.680 kb on + strand at 3162.688 kb on - strand at 3162.716 kb on + strand at 3162.748 kb on - strand at 3162.788 kb on + strand at 3162.943 kb on - strand at 3162.959 kb on + strand at 3163.007 kb on - strand at 3163.062 kb on + strand at 3163.400 kb on - strand at 3163.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,160,311 - Dsui_2952 0.25 +0.8 3,160,322 - +0.8 3,160,364 + -0.2 3,160,368 - Dsui_2952 0.29 +0.8 3,160,378 - Dsui_2952 0.30 -1.5 3,160,521 + Dsui_2952 0.41 -0.7 3,160,539 - Dsui_2952 0.42 -2.4 3,160,570 - Dsui_2952 0.45 -0.8 3,160,723 + -0.8 3,160,733 + -0.2 3,160,814 - Dsui_2952 0.63 -0.8 3,160,826 + +0.8 3,160,834 - Dsui_2952 0.65 +0.8 3,160,834 - Dsui_2952 0.65 +0.8 3,160,931 - Dsui_2952 0.72 +0.8 3,160,983 - Dsui_2952 0.76 -0.8 3,161,042 - Dsui_2952 0.80 -1.2 3,161,054 - +0.8 3,161,108 - Dsui_2952 0.85 -1.2 3,161,181 - +0.8 3,161,187 - -1.2 3,161,276 - -0.2 3,161,276 - -3.1 3,161,430 + -1.5 3,161,660 - Dsui_2953 0.25 +0.8 3,161,734 - Dsui_2953 0.30 -0.8 3,161,759 - Dsui_2953 0.32 -1.2 3,161,831 + -0.2 3,161,846 - Dsui_2953 0.38 +0.8 3,161,856 - Dsui_2953 0.39 -2.2 3,161,856 - Dsui_2953 0.39 -0.8 3,161,910 - Dsui_2953 0.43 -0.2 3,161,971 - Dsui_2953 0.47 +0.8 3,161,971 - Dsui_2953 0.47 -1.8 3,161,978 - Dsui_2953 0.48 -1.5 3,162,028 + -0.2 3,162,033 - Dsui_2953 0.52 -0.8 3,162,118 + +0.8 3,162,292 - Dsui_2953 0.70 -0.8 3,162,460 + -0.2 3,162,528 - Dsui_2953 0.87 +0.8 3,162,533 + +0.8 3,162,588 + -1.5 3,162,680 + -0.8 3,162,688 - -0.8 3,162,716 + -1.5 3,162,748 - +0.4 3,162,788 + -1.2 3,162,943 - +0.8 3,162,959 + -0.2 3,163,007 - -1.8 3,163,062 + -0.2 3,163,400 - -0.2 3,163,400 - -0.2
Or see this region's nucleotide sequence