Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2884 and Dsui_2885 are separated by 189 nucleotides Dsui_2885 and Dsui_2886 are separated by 226 nucleotides Dsui_2886 and Dsui_2887 overlap by 1 nucleotides
Dsui_2884: Dsui_2884 - dethiobiotin synthase, at 3,079,955 to 3,080,608
_2884
Dsui_2885: Dsui_2885 - PAS domain S-box, at 3,080,798 to 3,083,941
_2885
Dsui_2886: Dsui_2886 - intracellular septation protein A, at 3,084,168 to 3,084,707
_2886
Dsui_2887: Dsui_2887 - hypothetical protein, at 3,084,707 to 3,085,009
_2887
Position (kb)
3080
3081
3082
3083
3084 Strain fitness (log2 ratio)
-2
-1
0
1 at 3079.928 kb on - strand at 3079.953 kb on + strand at 3079.961 kb on - strand at 3079.963 kb on + strand at 3080.005 kb on - strand at 3080.046 kb on - strand, within Dsui_2884 at 3080.148 kb on + strand, within Dsui_2884 at 3080.155 kb on - strand, within Dsui_2884 at 3080.163 kb on + strand, within Dsui_2884 at 3080.355 kb on - strand at 3080.416 kb on + strand, within Dsui_2884 at 3080.602 kb on + strand at 3080.872 kb on + strand at 3080.938 kb on + strand at 3081.282 kb on - strand, within Dsui_2885 at 3081.310 kb on + strand, within Dsui_2885 at 3081.389 kb on + strand at 3081.421 kb on + strand at 3081.497 kb on + strand, within Dsui_2885 at 3081.669 kb on + strand, within Dsui_2885 at 3081.677 kb on - strand, within Dsui_2885 at 3081.696 kb on + strand, within Dsui_2885 at 3081.786 kb on - strand, within Dsui_2885 at 3081.817 kb on + strand, within Dsui_2885 at 3082.072 kb on + strand, within Dsui_2885 at 3082.088 kb on - strand, within Dsui_2885 at 3082.088 kb on - strand, within Dsui_2885 at 3082.200 kb on - strand at 3082.216 kb on + strand, within Dsui_2885 at 3082.216 kb on + strand, within Dsui_2885 at 3082.224 kb on - strand, within Dsui_2885 at 3082.325 kb on + strand at 3082.410 kb on + strand, within Dsui_2885 at 3082.709 kb on - strand, within Dsui_2885 at 3082.717 kb on - strand, within Dsui_2885 at 3082.755 kb on + strand, within Dsui_2885 at 3082.968 kb on + strand at 3083.009 kb on - strand, within Dsui_2885 at 3083.016 kb on + strand, within Dsui_2885 at 3083.034 kb on - strand, within Dsui_2885 at 3083.034 kb on - strand, within Dsui_2885 at 3083.150 kb on + strand at 3083.470 kb on - strand, within Dsui_2885 at 3083.538 kb on - strand, within Dsui_2885 at 3083.615 kb on - strand, within Dsui_2885 at 3083.664 kb on - strand at 3083.664 kb on - strand at 3083.957 kb on - strand at 3084.040 kb on - strand at 3084.664 kb on + strand at 3084.820 kb on - strand at 3084.829 kb on + strand, within Dsui_2887 at 3084.906 kb on + strand, within Dsui_2887 at 3084.907 kb on + strand, within Dsui_2887
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,079,928 - +0.8 3,079,953 + -0.2 3,079,961 - +0.8 3,079,963 + -0.3 3,080,005 - +0.8 3,080,046 - Dsui_2884 0.14 -1.2 3,080,148 + Dsui_2884 0.30 +0.3 3,080,155 - Dsui_2884 0.31 -0.8 3,080,163 + Dsui_2884 0.32 -0.2 3,080,355 - -0.8 3,080,416 + Dsui_2884 0.70 +0.0 3,080,602 + +0.3 3,080,872 + -0.2 3,080,938 + +0.8 3,081,282 - Dsui_2885 0.15 -1.2 3,081,310 + Dsui_2885 0.16 +0.8 3,081,389 + +0.8 3,081,421 + +0.8 3,081,497 + Dsui_2885 0.22 -0.2 3,081,669 + Dsui_2885 0.28 +0.8 3,081,677 - Dsui_2885 0.28 -0.8 3,081,696 + Dsui_2885 0.29 +0.8 3,081,786 - Dsui_2885 0.31 -0.2 3,081,817 + Dsui_2885 0.32 -1.2 3,082,072 + Dsui_2885 0.41 -0.2 3,082,088 - Dsui_2885 0.41 +0.8 3,082,088 - Dsui_2885 0.41 +0.8 3,082,200 - -0.2 3,082,216 + Dsui_2885 0.45 +0.8 3,082,216 + Dsui_2885 0.45 -1.2 3,082,224 - Dsui_2885 0.45 -2.2 3,082,325 + +0.8 3,082,410 + Dsui_2885 0.51 +0.8 3,082,709 - Dsui_2885 0.61 +0.8 3,082,717 - Dsui_2885 0.61 -1.5 3,082,755 + Dsui_2885 0.62 -0.2 3,082,968 + -0.8 3,083,009 - Dsui_2885 0.70 -2.4 3,083,016 + Dsui_2885 0.71 -2.2 3,083,034 - Dsui_2885 0.71 +0.8 3,083,034 - Dsui_2885 0.71 -0.2 3,083,150 + +0.8 3,083,470 - Dsui_2885 0.85 -1.8 3,083,538 - Dsui_2885 0.87 +0.8 3,083,615 - Dsui_2885 0.90 +0.8 3,083,664 - -0.8 3,083,664 - -0.8 3,083,957 - +0.8 3,084,040 - -0.5 3,084,664 + -0.7 3,084,820 - +0.8 3,084,829 + Dsui_2887 0.40 +0.1 3,084,906 + Dsui_2887 0.66 -0.2 3,084,907 + Dsui_2887 0.66 +0.5
Or see this region's nucleotide sequence