Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2823 and Dsui_2824 are separated by 100 nucleotides Dsui_2824 and Dsui_2825 are separated by 143 nucleotides Dsui_2825 and Dsui_2826 are separated by 33 nucleotides Dsui_2826 and Dsui_2827 are separated by 204 nucleotides Dsui_2827 and Dsui_2828 are separated by 59 nucleotides
Dsui_2823: Dsui_2823 - DNA internalization-related competence protein ComEC/Rec2, at 2,999,025 to 3,000,758
_2823
Dsui_2824: Dsui_2824 - hypothetical protein, at 3,000,859 to 3,000,951
_2824
Dsui_2825: Dsui_2825 - hypothetical protein, at 3,001,095 to 3,004,202
_2825
Dsui_2826: Dsui_2826 - hypothetical protein, at 3,004,236 to 3,004,346
_2826
Dsui_2827: Dsui_2827 - hypothetical protein, at 3,004,551 to 3,005,000
_2827
Dsui_2828: Dsui_2828 - hypothetical protein, at 3,005,060 to 3,006,079
_2828
Position (kb)
3001
3002
3003
3004
3005 Strain fitness (log2 ratio)
-2
-1
0
1 at 3000.198 kb on - strand, within Dsui_2823 at 3000.247 kb on + strand at 3000.266 kb on + strand at 3000.300 kb on - strand, within Dsui_2823 at 3000.399 kb on - strand, within Dsui_2823 at 3000.470 kb on + strand, within Dsui_2823 at 3000.478 kb on - strand at 3000.488 kb on - strand, within Dsui_2823 at 3000.573 kb on - strand, within Dsui_2823 at 3000.575 kb on - strand, within Dsui_2823 at 3000.618 kb on + strand at 3000.618 kb on + strand at 3000.626 kb on - strand at 3000.732 kb on - strand at 3000.781 kb on + strand at 3000.781 kb on - strand at 3000.788 kb on - strand at 3000.789 kb on - strand at 3000.805 kb on + strand at 3000.812 kb on + strand at 3000.813 kb on - strand at 3000.820 kb on - strand at 3000.820 kb on - strand at 3000.820 kb on - strand at 3000.822 kb on + strand at 3000.823 kb on - strand at 3000.823 kb on - strand at 3000.823 kb on - strand at 3000.823 kb on - strand at 3000.830 kb on - strand at 3000.830 kb on - strand at 3000.846 kb on + strand at 3000.931 kb on - strand, within Dsui_2824 at 3000.931 kb on - strand, within Dsui_2824 at 3000.948 kb on - strand at 3001.012 kb on + strand at 3001.049 kb on + strand at 3001.049 kb on + strand at 3001.057 kb on - strand at 3001.066 kb on - strand at 3001.066 kb on - strand at 3001.066 kb on - strand at 3001.096 kb on - strand at 3001.124 kb on - strand at 3001.125 kb on + strand at 3001.133 kb on - strand at 3001.135 kb on - strand at 3001.186 kb on - strand at 3001.186 kb on - strand at 3001.186 kb on - strand at 3001.303 kb on + strand at 3001.303 kb on + strand at 3001.305 kb on + strand at 3001.305 kb on + strand at 3001.308 kb on - strand at 3001.308 kb on - strand at 3001.311 kb on - strand at 3001.367 kb on + strand at 3001.375 kb on - strand at 3001.375 kb on - strand at 3001.401 kb on + strand at 3001.401 kb on + strand at 3001.409 kb on - strand, within Dsui_2825 at 3001.409 kb on - strand, within Dsui_2825 at 3001.522 kb on - strand, within Dsui_2825 at 3001.529 kb on - strand, within Dsui_2825 at 3001.590 kb on + strand, within Dsui_2825 at 3001.639 kb on + strand at 3001.654 kb on + strand, within Dsui_2825 at 3001.662 kb on - strand at 3001.688 kb on + strand, within Dsui_2825 at 3001.733 kb on + strand at 3001.780 kb on + strand, within Dsui_2825 at 3001.782 kb on - strand at 3001.807 kb on - strand, within Dsui_2825 at 3001.842 kb on + strand, within Dsui_2825 at 3001.844 kb on + strand, within Dsui_2825 at 3001.850 kb on - strand, within Dsui_2825 at 3001.852 kb on - strand at 3001.894 kb on - strand, within Dsui_2825 at 3001.939 kb on + strand, within Dsui_2825 at 3001.977 kb on - strand, within Dsui_2825 at 3001.986 kb on + strand, within Dsui_2825 at 3002.031 kb on - strand, within Dsui_2825 at 3002.071 kb on + strand, within Dsui_2825 at 3002.074 kb on + strand, within Dsui_2825 at 3002.102 kb on + strand, within Dsui_2825 at 3002.104 kb on + strand, within Dsui_2825 at 3002.104 kb on + strand, within Dsui_2825 at 3002.104 kb on + strand, within Dsui_2825 at 3002.104 kb on + strand at 3002.111 kb on - strand, within Dsui_2825 at 3002.112 kb on - strand at 3002.118 kb on - strand at 3002.118 kb on - strand at 3002.118 kb on - strand at 3002.118 kb on - strand at 3002.150 kb on - strand, within Dsui_2825 at 3002.205 kb on + strand, within Dsui_2825 at 3002.257 kb on + strand, within Dsui_2825 at 3002.257 kb on + strand, within Dsui_2825 at 3002.299 kb on - strand, within Dsui_2825 at 3002.364 kb on + strand, within Dsui_2825 at 3002.375 kb on + strand, within Dsui_2825 at 3002.385 kb on + strand, within Dsui_2825 at 3002.391 kb on - strand at 3002.551 kb on - strand, within Dsui_2825 at 3002.563 kb on - strand, within Dsui_2825 at 3002.567 kb on + strand, within Dsui_2825 at 3002.623 kb on - strand, within Dsui_2825 at 3002.723 kb on - strand, within Dsui_2825 at 3002.784 kb on + strand, within Dsui_2825 at 3002.878 kb on + strand, within Dsui_2825 at 3002.878 kb on + strand, within Dsui_2825 at 3002.881 kb on - strand, within Dsui_2825 at 3002.905 kb on - strand, within Dsui_2825 at 3002.961 kb on + strand, within Dsui_2825 at 3002.966 kb on - strand at 3003.084 kb on - strand, within Dsui_2825 at 3003.086 kb on - strand at 3003.112 kb on + strand, within Dsui_2825 at 3003.112 kb on + strand, within Dsui_2825 at 3003.120 kb on - strand, within Dsui_2825 at 3003.261 kb on + strand, within Dsui_2825 at 3003.309 kb on - strand, within Dsui_2825 at 3003.335 kb on + strand, within Dsui_2825 at 3003.372 kb on + strand, within Dsui_2825 at 3003.399 kb on - strand, within Dsui_2825 at 3003.491 kb on + strand, within Dsui_2825 at 3003.529 kb on + strand, within Dsui_2825 at 3003.532 kb on - strand, within Dsui_2825 at 3003.575 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.588 kb on - strand, within Dsui_2825 at 3003.636 kb on - strand at 3003.647 kb on - strand at 3003.773 kb on - strand, within Dsui_2825 at 3003.782 kb on - strand, within Dsui_2825 at 3003.802 kb on - strand, within Dsui_2825 at 3003.860 kb on + strand, within Dsui_2825 at 3003.868 kb on - strand, within Dsui_2825 at 3003.976 kb on - strand at 3004.021 kb on - strand at 3004.037 kb on + strand at 3004.040 kb on - strand at 3004.052 kb on + strand at 3004.102 kb on - strand at 3004.131 kb on + strand at 3004.200 kb on - strand at 3004.284 kb on - strand, within Dsui_2826 at 3004.346 kb on + strand at 3004.354 kb on - strand at 3004.427 kb on + strand at 3004.427 kb on + strand at 3004.435 kb on - strand at 3004.504 kb on - strand at 3004.577 kb on - strand at 3004.591 kb on + strand at 3004.610 kb on + strand, within Dsui_2827 at 3004.645 kb on + strand, within Dsui_2827 at 3004.645 kb on + strand, within Dsui_2827 at 3004.669 kb on - strand, within Dsui_2827 at 3004.693 kb on + strand, within Dsui_2827 at 3004.721 kb on - strand, within Dsui_2827 at 3004.740 kb on - strand, within Dsui_2827 at 3004.897 kb on + strand, within Dsui_2827 at 3004.903 kb on + strand, within Dsui_2827 at 3004.905 kb on + strand, within Dsui_2827 at 3004.915 kb on - strand, within Dsui_2827 at 3004.971 kb on + strand at 3005.051 kb on + strand at 3005.111 kb on + strand at 3005.129 kb on - strand at 3005.196 kb on - strand, within Dsui_2828
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,000,198 - Dsui_2823 0.68 -1.1 3,000,247 + -0.1 3,000,266 + +0.9 3,000,300 - Dsui_2823 0.74 +0.9 3,000,399 - Dsui_2823 0.79 +0.9 3,000,470 + Dsui_2823 0.83 +0.9 3,000,478 - +0.9 3,000,488 - Dsui_2823 0.84 -2.1 3,000,573 - Dsui_2823 0.89 +0.9 3,000,575 - Dsui_2823 0.89 -0.7 3,000,618 + +0.9 3,000,618 + +0.9 3,000,626 - +0.9 3,000,732 - -1.4 3,000,781 + +0.9 3,000,781 - -0.7 3,000,788 - -1.1 3,000,789 - +0.9 3,000,805 + -0.7 3,000,812 + +0.9 3,000,813 - +0.9 3,000,820 - +0.9 3,000,820 - -0.1 3,000,820 - -1.1 3,000,822 + +0.9 3,000,823 - -1.1 3,000,823 - -0.1 3,000,823 - -0.7 3,000,823 - -1.1 3,000,830 - -0.1 3,000,830 - -1.4 3,000,846 + +0.9 3,000,931 - Dsui_2824 0.77 +0.9 3,000,931 - Dsui_2824 0.77 -0.7 3,000,948 - +0.9 3,001,012 + +0.9 3,001,049 + +0.9 3,001,049 + +0.9 3,001,057 - -1.1 3,001,066 - +0.3 3,001,066 - -1.4 3,001,066 - +0.9 3,001,096 - -0.1 3,001,124 - -0.1 3,001,125 + -0.7 3,001,133 - -0.7 3,001,135 - -2.6 3,001,186 - -1.7 3,001,186 - +0.9 3,001,186 - -0.7 3,001,303 + -0.1 3,001,303 + +0.9 3,001,305 + -0.1 3,001,305 + -0.1 3,001,308 - +0.9 3,001,308 - -1.4 3,001,311 - -1.1 3,001,367 + +0.9 3,001,375 - -0.1 3,001,375 - +0.9 3,001,401 + +0.9 3,001,401 + -0.1 3,001,409 - Dsui_2825 0.10 +0.9 3,001,409 - Dsui_2825 0.10 -1.1 3,001,522 - Dsui_2825 0.14 -0.1 3,001,529 - Dsui_2825 0.14 -0.7 3,001,590 + Dsui_2825 0.16 -1.1 3,001,639 + +0.9 3,001,654 + Dsui_2825 0.18 -0.3 3,001,662 - +0.9 3,001,688 + Dsui_2825 0.19 -1.1 3,001,733 + +0.9 3,001,780 + Dsui_2825 0.22 -0.4 3,001,782 - +0.9 3,001,807 - Dsui_2825 0.23 +0.9 3,001,842 + Dsui_2825 0.24 +0.9 3,001,844 + Dsui_2825 0.24 +0.9 3,001,850 - Dsui_2825 0.24 -1.4 3,001,852 - +0.9 3,001,894 - Dsui_2825 0.26 +0.9 3,001,939 + Dsui_2825 0.27 -1.7 3,001,977 - Dsui_2825 0.28 -2.6 3,001,986 + Dsui_2825 0.29 -0.1 3,002,031 - Dsui_2825 0.30 +0.9 3,002,071 + Dsui_2825 0.31 +0.9 3,002,074 + Dsui_2825 0.31 -0.7 3,002,102 + Dsui_2825 0.32 -0.1 3,002,104 + Dsui_2825 0.32 -2.1 3,002,104 + Dsui_2825 0.32 -0.1 3,002,104 + Dsui_2825 0.32 -2.1 3,002,104 + -0.7 3,002,111 - Dsui_2825 0.33 +0.9 3,002,112 - +0.9 3,002,118 - +0.9 3,002,118 - -0.1 3,002,118 - +0.9 3,002,118 - +0.9 3,002,150 - Dsui_2825 0.34 -1.4 3,002,205 + Dsui_2825 0.36 -0.1 3,002,257 + Dsui_2825 0.37 +0.9 3,002,257 + Dsui_2825 0.37 +0.9 3,002,299 - Dsui_2825 0.39 -0.7 3,002,364 + Dsui_2825 0.41 +0.9 3,002,375 + Dsui_2825 0.41 -0.1 3,002,385 + Dsui_2825 0.42 -0.7 3,002,391 - +0.9 3,002,551 - Dsui_2825 0.47 -1.1 3,002,563 - Dsui_2825 0.47 -0.1 3,002,567 + Dsui_2825 0.47 -0.1 3,002,623 - Dsui_2825 0.49 -1.4 3,002,723 - Dsui_2825 0.52 -1.4 3,002,784 + Dsui_2825 0.54 -1.4 3,002,878 + Dsui_2825 0.57 +0.9 3,002,878 + Dsui_2825 0.57 -0.1 3,002,881 - Dsui_2825 0.57 -0.7 3,002,905 - Dsui_2825 0.58 +0.9 3,002,961 + Dsui_2825 0.60 -0.1 3,002,966 - +0.9 3,003,084 - Dsui_2825 0.64 -0.7 3,003,086 - -0.1 3,003,112 + Dsui_2825 0.65 -0.7 3,003,112 + Dsui_2825 0.65 +0.9 3,003,120 - Dsui_2825 0.65 -1.4 3,003,261 + Dsui_2825 0.70 +0.9 3,003,309 - Dsui_2825 0.71 +0.9 3,003,335 + Dsui_2825 0.72 -1.1 3,003,372 + Dsui_2825 0.73 +0.9 3,003,399 - Dsui_2825 0.74 -0.1 3,003,491 + Dsui_2825 0.77 +0.9 3,003,529 + Dsui_2825 0.78 -1.5 3,003,532 - Dsui_2825 0.78 +0.9 3,003,575 + Dsui_2825 0.80 +0.9 3,003,580 + Dsui_2825 0.80 -0.7 3,003,580 + Dsui_2825 0.80 -0.1 3,003,580 + Dsui_2825 0.80 +0.9 3,003,580 + Dsui_2825 0.80 -0.1 3,003,588 - Dsui_2825 0.80 +0.9 3,003,636 - -0.7 3,003,647 - +0.9 3,003,773 - Dsui_2825 0.86 -1.5 3,003,782 - Dsui_2825 0.86 -0.1 3,003,802 - Dsui_2825 0.87 +0.9 3,003,860 + Dsui_2825 0.89 -1.1 3,003,868 - Dsui_2825 0.89 +0.9 3,003,976 - +0.9 3,004,021 - -1.1 3,004,037 + +0.9 3,004,040 - +0.9 3,004,052 + -1.5 3,004,102 - -1.1 3,004,131 + -1.7 3,004,200 - -1.1 3,004,284 - Dsui_2826 0.43 +0.0 3,004,346 + -2.5 3,004,354 - -0.1 3,004,427 + +0.9 3,004,427 + -0.2 3,004,435 - +0.9 3,004,504 - +0.2 3,004,577 - +0.5 3,004,591 + -0.7 3,004,610 + Dsui_2827 0.13 -0.1 3,004,645 + Dsui_2827 0.21 +0.9 3,004,645 + Dsui_2827 0.21 -0.1 3,004,669 - Dsui_2827 0.26 -0.7 3,004,693 + Dsui_2827 0.32 -0.1 3,004,721 - Dsui_2827 0.38 -1.5 3,004,740 - Dsui_2827 0.42 -0.7 3,004,897 + Dsui_2827 0.77 +0.9 3,004,903 + Dsui_2827 0.78 +0.9 3,004,905 + Dsui_2827 0.79 +0.9 3,004,915 - Dsui_2827 0.81 -0.1 3,004,971 + -0.1 3,005,051 + +0.9 3,005,111 + -0.1 3,005,129 - -0.1 3,005,196 - Dsui_2828 0.13 +0.8
Or see this region's nucleotide sequence