Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2790 and Dsui_2791 are separated by 23 nucleotides Dsui_2791 and Dsui_2792 are separated by 89 nucleotides Dsui_2792 and Dsui_2793 are separated by 232 nucleotides Dsui_2793 and Dsui_2794 are separated by 23 nucleotides Dsui_2794 and Dsui_2795 are separated by 55 nucleotides Dsui_2795 and Dsui_2796 are separated by 77 nucleotides Dsui_2796 and Dsui_2797 are separated by 184 nucleotides
Dsui_2790: Dsui_2790 - tRNA-Ala, at 2,963,149 to 2,963,224
_2790
Dsui_2791: Dsui_2791 - tRNA-Glu, at 2,963,248 to 2,963,323
_2791
Dsui_2792: Dsui_2792 - tRNA-Asp, at 2,963,413 to 2,963,489
_2792
Dsui_2793: Dsui_2793 - tRNA-Ala, at 2,963,722 to 2,963,797
_2793
Dsui_2794: Dsui_2794 - tRNA-Glu, at 2,963,821 to 2,963,896
_2794
Dsui_2795: Dsui_2795 - tRNA-Asp, at 2,963,952 to 2,964,028
_2795
Dsui_2796: Dsui_2796 - NAD-dependent protein deacetylase, SIR2 family, at 2,964,106 to 2,964,867
_2796
Dsui_2797: Dsui_2797 - LysM repeat-containing protein, at 2,965,052 to 2,966,869
_2797
Position (kb)
2964
2965 Strain fitness (log2 ratio)
-2
-1
0
1 at 2963.107 kb on - strand at 2963.323 kb on + strand at 2963.360 kb on + strand at 2963.385 kb on + strand at 2963.550 kb on + strand at 2963.550 kb on + strand at 2963.582 kb on + strand at 2963.583 kb on + strand at 2963.631 kb on + strand at 2963.636 kb on + strand at 2963.937 kb on + strand at 2963.937 kb on + strand at 2964.153 kb on + strand at 2964.268 kb on + strand, within Dsui_2796 at 2964.280 kb on + strand, within Dsui_2796 at 2964.295 kb on - strand at 2964.305 kb on - strand, within Dsui_2796 at 2964.407 kb on + strand, within Dsui_2796 at 2964.435 kb on + strand, within Dsui_2796 at 2964.450 kb on - strand at 2964.464 kb on + strand, within Dsui_2796 at 2964.521 kb on + strand, within Dsui_2796 at 2964.600 kb on - strand, within Dsui_2796 at 2964.651 kb on + strand, within Dsui_2796 at 2964.732 kb on + strand, within Dsui_2796 at 2964.750 kb on + strand, within Dsui_2796 at 2964.758 kb on - strand at 2964.910 kb on - strand at 2964.937 kb on + strand at 2964.976 kb on - strand at 2965.072 kb on + strand at 2965.080 kb on - strand at 2965.180 kb on - strand at 2965.214 kb on - strand at 2965.256 kb on + strand, within Dsui_2797 at 2965.447 kb on + strand, within Dsui_2797 at 2965.454 kb on + strand, within Dsui_2797 at 2965.558 kb on + strand, within Dsui_2797 at 2965.584 kb on + strand, within Dsui_2797 at 2965.584 kb on + strand, within Dsui_2797 at 2965.592 kb on - strand, within Dsui_2797 at 2965.649 kb on + strand, within Dsui_2797 at 2965.748 kb on + strand, within Dsui_2797
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,963,107 - +0.9 2,963,323 + -0.2 2,963,360 + +0.1 2,963,385 + -0.1 2,963,550 + -1.4 2,963,550 + -0.7 2,963,582 + -1.4 2,963,583 + -1.7 2,963,631 + -0.1 2,963,636 + +0.9 2,963,937 + +0.2 2,963,937 + -0.1 2,964,153 + -0.9 2,964,268 + Dsui_2796 0.21 -0.5 2,964,280 + Dsui_2796 0.23 -0.1 2,964,295 - +0.9 2,964,305 - Dsui_2796 0.26 +0.9 2,964,407 + Dsui_2796 0.40 -0.4 2,964,435 + Dsui_2796 0.43 -0.6 2,964,450 - -0.1 2,964,464 + Dsui_2796 0.47 -2.0 2,964,521 + Dsui_2796 0.54 -1.4 2,964,600 - Dsui_2796 0.65 -0.1 2,964,651 + Dsui_2796 0.72 -0.8 2,964,732 + Dsui_2796 0.82 -0.3 2,964,750 + Dsui_2796 0.85 -1.1 2,964,758 - -0.1 2,964,910 - -0.1 2,964,937 + -0.3 2,964,976 - -0.1 2,965,072 + +0.1 2,965,080 - -1.9 2,965,180 - +0.9 2,965,214 - -0.1 2,965,256 + Dsui_2797 0.11 -0.1 2,965,447 + Dsui_2797 0.22 -0.2 2,965,454 + Dsui_2797 0.22 +0.1 2,965,558 + Dsui_2797 0.28 -0.1 2,965,584 + Dsui_2797 0.29 -0.1 2,965,584 + Dsui_2797 0.29 -0.1 2,965,592 - Dsui_2797 0.30 +1.1 2,965,649 + Dsui_2797 0.33 +0.1 2,965,748 + Dsui_2797 0.38 -0.1
Or see this region's nucleotide sequence