Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2768 and Dsui_2769 are separated by 289 nucleotides Dsui_2769 and Dsui_2770 are separated by 7 nucleotides
Dsui_2768: Dsui_2768 - uncharacterized protein involved in outer membrane biogenesis, at 2,925,873 to 2,926,982
_2768
Dsui_2769: Dsui_2769 - large extracellular alpha-helical protein, at 2,927,272 to 2,932,953
_2769
Dsui_2770: Dsui_2770 - penicillin-binding protein 1C, at 2,932,961 to 2,935,231
_2770
Position (kb)
2927
2928
2929
2930
2931
2932
2933 Strain fitness (log2 ratio)
-1
0
1 at 2926.311 kb on + strand, within Dsui_2768 at 2926.385 kb on + strand, within Dsui_2768 at 2926.393 kb on - strand, within Dsui_2768 at 2926.451 kb on - strand at 2926.496 kb on + strand at 2926.532 kb on + strand, within Dsui_2768 at 2926.532 kb on + strand at 2926.540 kb on - strand at 2926.655 kb on + strand, within Dsui_2768 at 2926.801 kb on + strand, within Dsui_2768 at 2926.902 kb on + strand at 2927.081 kb on - strand at 2927.363 kb on - strand at 2927.429 kb on - strand at 2927.519 kb on + strand at 2927.601 kb on - strand at 2927.674 kb on + strand at 2927.753 kb on + strand at 2927.872 kb on + strand at 2927.973 kb on + strand at 2928.118 kb on + strand, within Dsui_2769 at 2928.255 kb on + strand at 2928.659 kb on + strand, within Dsui_2769 at 2928.691 kb on + strand at 2928.763 kb on + strand at 2929.008 kb on + strand, within Dsui_2769 at 2929.095 kb on + strand, within Dsui_2769 at 2929.122 kb on + strand at 2929.140 kb on - strand at 2929.373 kb on + strand, within Dsui_2769 at 2929.376 kb on - strand, within Dsui_2769 at 2929.466 kb on - strand at 2929.558 kb on + strand, within Dsui_2769 at 2929.609 kb on + strand at 2929.632 kb on + strand, within Dsui_2769 at 2929.679 kb on + strand at 2929.703 kb on + strand, within Dsui_2769 at 2929.870 kb on + strand, within Dsui_2769 at 2929.870 kb on + strand at 2929.903 kb on + strand at 2929.946 kb on - strand at 2930.038 kb on + strand at 2930.193 kb on + strand at 2930.227 kb on - strand at 2930.278 kb on - strand at 2930.287 kb on + strand, within Dsui_2769 at 2930.361 kb on - strand at 2930.441 kb on + strand, within Dsui_2769 at 2930.444 kb on + strand at 2930.537 kb on + strand, within Dsui_2769 at 2930.576 kb on + strand at 2930.613 kb on + strand, within Dsui_2769 at 2930.618 kb on + strand at 2930.618 kb on + strand, within Dsui_2769 at 2930.626 kb on - strand at 2930.761 kb on - strand at 2930.836 kb on + strand, within Dsui_2769 at 2931.055 kb on + strand at 2931.348 kb on + strand at 2931.357 kb on - strand at 2931.555 kb on + strand at 2931.574 kb on + strand, within Dsui_2769 at 2931.664 kb on + strand at 2931.698 kb on + strand at 2931.867 kb on + strand, within Dsui_2769 at 2932.067 kb on - strand at 2932.102 kb on + strand at 2932.160 kb on - strand at 2932.160 kb on - strand at 2932.276 kb on + strand at 2932.402 kb on + strand at 2932.404 kb on - strand at 2932.470 kb on + strand at 2932.651 kb on - strand at 2932.656 kb on - strand at 2932.704 kb on + strand at 2932.748 kb on + strand at 2932.793 kb on + strand at 2932.943 kb on - strand at 2933.017 kb on + strand at 2933.068 kb on - strand at 2933.340 kb on + strand, within Dsui_2770 at 2933.703 kb on - strand at 2933.823 kb on + strand at 2933.853 kb on + strand at 2933.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,926,311 + Dsui_2768 0.39 -1.2 2,926,385 + Dsui_2768 0.46 +0.8 2,926,393 - Dsui_2768 0.47 +0.8 2,926,451 - +0.8 2,926,496 + +0.8 2,926,532 + Dsui_2768 0.59 -0.2 2,926,532 + +0.8 2,926,540 - +0.8 2,926,655 + Dsui_2768 0.70 +0.8 2,926,801 + Dsui_2768 0.84 -1.7 2,926,902 + +0.8 2,927,081 - -0.2 2,927,363 - -0.7 2,927,429 - -0.7 2,927,519 + -0.2 2,927,601 - -0.7 2,927,674 + +0.8 2,927,753 + -1.2 2,927,872 + +0.8 2,927,973 + +0.8 2,928,118 + Dsui_2769 0.15 -0.2 2,928,255 + -0.2 2,928,659 + Dsui_2769 0.24 +0.8 2,928,691 + +0.8 2,928,763 + +0.8 2,929,008 + Dsui_2769 0.31 +0.8 2,929,095 + Dsui_2769 0.32 -0.2 2,929,122 + +0.8 2,929,140 - -0.7 2,929,373 + Dsui_2769 0.37 +0.8 2,929,376 - Dsui_2769 0.37 -0.7 2,929,466 - +0.8 2,929,558 + Dsui_2769 0.40 -0.2 2,929,609 + +0.8 2,929,632 + Dsui_2769 0.42 -0.7 2,929,679 + -0.7 2,929,703 + Dsui_2769 0.43 -0.7 2,929,870 + Dsui_2769 0.46 -0.2 2,929,870 + +0.8 2,929,903 + +0.8 2,929,946 - +0.8 2,930,038 + +0.8 2,930,193 + -0.2 2,930,227 - -0.7 2,930,278 - -0.7 2,930,287 + Dsui_2769 0.53 -0.2 2,930,361 - -1.2 2,930,441 + Dsui_2769 0.56 -0.2 2,930,444 + -1.2 2,930,537 + Dsui_2769 0.57 -0.7 2,930,576 + +0.8 2,930,613 + Dsui_2769 0.59 -0.7 2,930,618 + +0.8 2,930,618 + Dsui_2769 0.59 +0.8 2,930,626 - +0.8 2,930,761 - -0.2 2,930,836 + Dsui_2769 0.63 -1.5 2,931,055 + +0.8 2,931,348 + +0.8 2,931,357 - -0.2 2,931,555 + -0.7 2,931,574 + Dsui_2769 0.76 -0.7 2,931,664 + +0.8 2,931,698 + +0.8 2,931,867 + Dsui_2769 0.81 -0.2 2,932,067 - +0.8 2,932,102 + +0.8 2,932,160 - -0.2 2,932,160 - +0.8 2,932,276 + +0.8 2,932,402 + -1.7 2,932,404 - -0.2 2,932,470 + -1.2 2,932,651 - -1.5 2,932,656 - +0.8 2,932,704 + +0.8 2,932,748 + -1.5 2,932,793 + -0.2 2,932,943 - -0.2 2,933,017 + -0.2 2,933,068 - -0.8 2,933,340 + Dsui_2770 0.17 +0.8 2,933,703 - -0.2 2,933,823 + +0.8 2,933,853 + +0.8 2,933,923 + +0.8
Or see this region's nucleotide sequence