Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2649 and Dsui_2650 are separated by 484 nucleotides Dsui_2650 and Dsui_2651 are separated by 68 nucleotides Dsui_2651 and Dsui_2652 are separated by 16 nucleotides
Dsui_2649: Dsui_2649 - transposase, TnpA family, at 2,802,979 to 2,805,981
_2649
Dsui_2650: Dsui_2650 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 2,806,466 to 2,807,458
_2650
Dsui_2651: Dsui_2651 - ankyrin repeat-containing protein, at 2,807,527 to 2,808,171
_2651
Dsui_2652: Dsui_2652 - hydrolase, TatD family, at 2,808,188 to 2,808,970
_2652
Position (kb)
2806
2807
2808 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2805.507 kb on + strand, within Dsui_2649 at 2805.545 kb on + strand, within Dsui_2649 at 2805.553 kb on - strand, within Dsui_2649 at 2805.558 kb on + strand, within Dsui_2649 at 2805.611 kb on - strand, within Dsui_2649 at 2805.643 kb on - strand, within Dsui_2649 at 2805.649 kb on - strand, within Dsui_2649 at 2805.649 kb on - strand, within Dsui_2649 at 2805.683 kb on - strand at 2805.792 kb on - strand at 2805.823 kb on + strand at 2805.849 kb on - strand at 2805.866 kb on + strand at 2806.061 kb on - strand at 2806.069 kb on - strand at 2806.071 kb on + strand at 2806.071 kb on + strand at 2806.136 kb on + strand at 2806.144 kb on - strand at 2806.144 kb on - strand at 2806.170 kb on + strand at 2806.200 kb on + strand at 2806.202 kb on - strand at 2806.208 kb on + strand at 2806.209 kb on - strand at 2806.215 kb on + strand at 2806.216 kb on - strand at 2806.222 kb on - strand at 2806.282 kb on - strand at 2806.282 kb on - strand at 2806.292 kb on - strand at 2806.325 kb on + strand at 2806.333 kb on - strand at 2806.368 kb on + strand at 2806.373 kb on + strand at 2806.373 kb on + strand at 2806.376 kb on - strand at 2806.381 kb on - strand at 2806.381 kb on - strand at 2806.383 kb on + strand at 2806.391 kb on - strand at 2806.391 kb on - strand at 2806.391 kb on - strand at 2806.391 kb on - strand at 2806.391 kb on - strand at 2806.398 kb on + strand at 2806.398 kb on + strand at 2806.403 kb on + strand at 2806.403 kb on + strand at 2806.403 kb on + strand at 2806.403 kb on + strand at 2806.411 kb on - strand at 2806.411 kb on - strand at 2806.411 kb on - strand at 2806.458 kb on + strand at 2806.494 kb on - strand at 2806.494 kb on - strand at 2806.517 kb on - strand at 2806.517 kb on - strand at 2806.518 kb on - strand at 2806.598 kb on + strand, within Dsui_2650 at 2806.606 kb on - strand, within Dsui_2650 at 2806.674 kb on - strand, within Dsui_2650 at 2806.735 kb on + strand, within Dsui_2650 at 2806.744 kb on + strand at 2806.744 kb on + strand at 2806.752 kb on - strand, within Dsui_2650 at 2806.762 kb on + strand, within Dsui_2650 at 2806.812 kb on + strand, within Dsui_2650 at 2806.889 kb on - strand, within Dsui_2650 at 2806.924 kb on + strand, within Dsui_2650 at 2806.924 kb on + strand, within Dsui_2650 at 2807.071 kb on - strand, within Dsui_2650 at 2807.071 kb on - strand, within Dsui_2650 at 2807.072 kb on - strand, within Dsui_2650 at 2807.106 kb on - strand, within Dsui_2650 at 2807.120 kb on + strand, within Dsui_2650 at 2807.356 kb on - strand, within Dsui_2650 at 2807.362 kb on - strand at 2807.425 kb on + strand at 2807.437 kb on + strand at 2807.468 kb on - strand at 2807.530 kb on + strand at 2807.530 kb on + strand at 2807.540 kb on + strand at 2807.604 kb on - strand, within Dsui_2651 at 2807.619 kb on + strand at 2807.637 kb on - strand at 2807.933 kb on - strand, within Dsui_2651 at 2808.088 kb on - strand at 2808.088 kb on - strand, within Dsui_2651 at 2808.089 kb on - strand at 2808.152 kb on + strand at 2808.256 kb on + strand at 2808.265 kb on + strand at 2808.349 kb on + strand, within Dsui_2652 at 2808.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,805,507 + Dsui_2649 0.84 -0.8 2,805,545 + Dsui_2649 0.85 +0.8 2,805,553 - Dsui_2649 0.86 -0.2 2,805,558 + Dsui_2649 0.86 +0.8 2,805,611 - Dsui_2649 0.88 -1.8 2,805,643 - Dsui_2649 0.89 +0.8 2,805,649 - Dsui_2649 0.89 -0.2 2,805,649 - Dsui_2649 0.89 -0.8 2,805,683 - -0.2 2,805,792 - +0.8 2,805,823 + +0.8 2,805,849 - -3.0 2,805,866 + +0.8 2,806,061 - -1.6 2,806,069 - +0.8 2,806,071 + -1.2 2,806,071 + -0.2 2,806,136 + -2.9 2,806,144 - -0.2 2,806,144 - -2.0 2,806,170 + +0.8 2,806,200 + -0.8 2,806,202 - -1.6 2,806,208 + +0.8 2,806,209 - -1.8 2,806,215 + +0.8 2,806,216 - +0.8 2,806,222 - -2.7 2,806,282 - +0.8 2,806,282 - +0.8 2,806,292 - +0.8 2,806,325 + -1.2 2,806,333 - -2.0 2,806,368 + +0.8 2,806,373 + +0.2 2,806,373 + +0.2 2,806,376 - -0.8 2,806,381 - +0.0 2,806,381 - +0.4 2,806,383 + +0.8 2,806,391 - -1.7 2,806,391 - -0.8 2,806,391 - -2.5 2,806,391 - +0.3 2,806,391 - +0.8 2,806,398 + +0.8 2,806,398 + +0.8 2,806,403 + -1.8 2,806,403 + +0.8 2,806,403 + +0.8 2,806,403 + +0.8 2,806,411 - -0.8 2,806,411 - -0.6 2,806,411 - +0.4 2,806,458 + +0.8 2,806,494 - +0.2 2,806,494 - +0.5 2,806,517 - -0.7 2,806,517 - -0.1 2,806,518 - +0.8 2,806,598 + Dsui_2650 0.13 -0.2 2,806,606 - Dsui_2650 0.14 +0.3 2,806,674 - Dsui_2650 0.21 -0.2 2,806,735 + Dsui_2650 0.27 -0.7 2,806,744 + +0.8 2,806,744 + +0.8 2,806,752 - Dsui_2650 0.29 +0.1 2,806,762 + Dsui_2650 0.30 +0.8 2,806,812 + Dsui_2650 0.35 -1.6 2,806,889 - Dsui_2650 0.43 -0.3 2,806,924 + Dsui_2650 0.46 -0.2 2,806,924 + Dsui_2650 0.46 -0.2 2,807,071 - Dsui_2650 0.61 +0.4 2,807,071 - Dsui_2650 0.61 +0.3 2,807,072 - Dsui_2650 0.61 +0.1 2,807,106 - Dsui_2650 0.64 -0.4 2,807,120 + Dsui_2650 0.66 -2.0 2,807,356 - Dsui_2650 0.90 -0.1 2,807,362 - -0.1 2,807,425 + -1.6 2,807,437 + +0.8 2,807,468 - -1.7 2,807,530 + -0.2 2,807,530 + +0.8 2,807,540 + -0.2 2,807,604 - Dsui_2651 0.12 -2.4 2,807,619 + -0.2 2,807,637 - -0.8 2,807,933 - Dsui_2651 0.63 -0.2 2,808,088 - -0.2 2,808,088 - Dsui_2651 0.87 -2.9 2,808,089 - +0.8 2,808,152 + +0.8 2,808,256 + +0.8 2,808,265 + -0.8 2,808,349 + Dsui_2652 0.21 +0.8 2,808,369 + +0.8
Or see this region's nucleotide sequence