Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2590 and Dsui_2591 are separated by 612 nucleotides Dsui_2591 and Dsui_2592 overlap by 1 nucleotides
Dsui_2590: Dsui_2590 - Pilin accessory protein (PilO), at 2,743,997 to 2,745,409
_2590
Dsui_2591: Dsui_2591 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 2,746,022 to 2,747,608
_2591
Dsui_2592: Dsui_2592 - type II secretory pathway, component PulF, at 2,747,608 to 2,748,720
_2592
Position (kb)
2746
2747
2748 Strain fitness (log2 ratio)
-2
-1
0
1 at 2745.216 kb on - strand, within Dsui_2590 at 2745.221 kb on - strand, within Dsui_2590 at 2745.274 kb on + strand at 2745.394 kb on + strand at 2745.572 kb on - strand at 2745.601 kb on - strand at 2745.787 kb on + strand at 2745.846 kb on + strand at 2745.872 kb on + strand at 2745.914 kb on + strand at 2746.008 kb on + strand at 2746.088 kb on + strand at 2746.142 kb on - strand at 2746.148 kb on + strand at 2746.217 kb on + strand, within Dsui_2591 at 2746.429 kb on + strand at 2746.611 kb on - strand, within Dsui_2591 at 2746.761 kb on + strand, within Dsui_2591 at 2746.788 kb on - strand, within Dsui_2591 at 2746.802 kb on + strand at 2746.805 kb on - strand, within Dsui_2591 at 2746.887 kb on - strand, within Dsui_2591 at 2746.889 kb on + strand, within Dsui_2591 at 2746.907 kb on + strand, within Dsui_2591 at 2746.928 kb on - strand, within Dsui_2591 at 2746.974 kb on - strand, within Dsui_2591 at 2747.118 kb on + strand, within Dsui_2591 at 2747.157 kb on + strand, within Dsui_2591 at 2747.405 kb on - strand, within Dsui_2591 at 2747.534 kb on - strand at 2747.713 kb on + strand at 2747.721 kb on - strand, within Dsui_2592 at 2747.746 kb on - strand, within Dsui_2592 at 2747.771 kb on - strand, within Dsui_2592 at 2747.801 kb on - strand, within Dsui_2592 at 2747.989 kb on + strand, within Dsui_2592 at 2748.044 kb on - strand, within Dsui_2592 at 2748.044 kb on - strand, within Dsui_2592 at 2748.046 kb on + strand, within Dsui_2592 at 2748.065 kb on - strand, within Dsui_2592 at 2748.084 kb on + strand, within Dsui_2592 at 2748.261 kb on - strand, within Dsui_2592 at 2748.314 kb on - strand, within Dsui_2592 at 2748.314 kb on - strand, within Dsui_2592 at 2748.324 kb on - strand, within Dsui_2592 at 2748.334 kb on + strand, within Dsui_2592 at 2748.357 kb on + strand, within Dsui_2592 at 2748.373 kb on - strand, within Dsui_2592 at 2748.487 kb on - strand, within Dsui_2592
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,745,216 - Dsui_2590 0.86 -0.9 2,745,221 - Dsui_2590 0.87 -0.3 2,745,274 + +0.7 2,745,394 + +0.7 2,745,572 - -0.9 2,745,601 - +0.7 2,745,787 + -1.9 2,745,846 + +0.7 2,745,872 + +0.7 2,745,914 + +0.7 2,746,008 + -0.3 2,746,088 + +0.7 2,746,142 - +0.7 2,746,148 + -1.3 2,746,217 + Dsui_2591 0.12 +0.7 2,746,429 + +0.7 2,746,611 - Dsui_2591 0.37 +0.7 2,746,761 + Dsui_2591 0.47 -0.3 2,746,788 - Dsui_2591 0.48 -0.3 2,746,802 + +0.7 2,746,805 - Dsui_2591 0.49 -0.3 2,746,887 - Dsui_2591 0.55 -1.6 2,746,889 + Dsui_2591 0.55 +0.7 2,746,907 + Dsui_2591 0.56 -0.9 2,746,928 - Dsui_2591 0.57 -0.9 2,746,974 - Dsui_2591 0.60 -0.3 2,747,118 + Dsui_2591 0.69 +0.7 2,747,157 + Dsui_2591 0.72 +0.7 2,747,405 - Dsui_2591 0.87 +0.7 2,747,534 - -0.3 2,747,713 + +0.7 2,747,721 - Dsui_2592 0.10 +0.7 2,747,746 - Dsui_2592 0.12 +0.7 2,747,771 - Dsui_2592 0.15 -0.9 2,747,801 - Dsui_2592 0.17 +0.7 2,747,989 + Dsui_2592 0.34 -0.3 2,748,044 - Dsui_2592 0.39 +0.7 2,748,044 - Dsui_2592 0.39 +0.7 2,748,046 + Dsui_2592 0.39 +0.7 2,748,065 - Dsui_2592 0.41 -0.3 2,748,084 + Dsui_2592 0.43 -0.3 2,748,261 - Dsui_2592 0.59 +0.7 2,748,314 - Dsui_2592 0.63 +0.7 2,748,314 - Dsui_2592 0.63 -0.9 2,748,324 - Dsui_2592 0.64 -1.3 2,748,334 + Dsui_2592 0.65 +0.7 2,748,357 + Dsui_2592 0.67 -0.3 2,748,373 - Dsui_2592 0.69 +0.7 2,748,487 - Dsui_2592 0.79 +0.7
Or see this region's nucleotide sequence