Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2585 and Dsui_2586 overlap by 4 nucleotides Dsui_2586 and Dsui_2587 are separated by 1 nucleotides Dsui_2587 and Dsui_2588 are separated by 22 nucleotides Dsui_2588 and Dsui_2589 are separated by 10 nucleotides
Dsui_2585: Dsui_2585 - type IV secretory pathway, component VirB8, at 2,738,371 to 2,739,075
_2585
Dsui_2586: Dsui_2586 - type IV secretory pathway, VirB9 component, at 2,739,072 to 2,740,058
_2586
Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385
_2587
Dsui_2588: Dsui_2588 - type IV secretory pathway, VirB9 component, at 2,741,408 to 2,742,262
_2588
Dsui_2589: Dsui_2589 - type II secretory pathway, component PulD, at 2,742,273 to 2,743,994
_2589
Position (kb)
2740
2741
2742 Strain fitness (log2 ratio)
-2
-1
0
1 at 2739.138 kb on - strand at 2739.165 kb on + strand at 2739.171 kb on - strand, within Dsui_2586 at 2739.258 kb on - strand, within Dsui_2586 at 2739.258 kb on - strand, within Dsui_2586 at 2739.289 kb on + strand, within Dsui_2586 at 2739.361 kb on + strand, within Dsui_2586 at 2739.427 kb on + strand, within Dsui_2586 at 2739.430 kb on - strand, within Dsui_2586 at 2739.773 kb on - strand, within Dsui_2586 at 2739.899 kb on + strand, within Dsui_2586 at 2739.942 kb on - strand, within Dsui_2586 at 2740.011 kb on - strand at 2740.069 kb on - strand at 2740.219 kb on - strand, within Dsui_2587 at 2740.285 kb on - strand, within Dsui_2587 at 2740.285 kb on - strand, within Dsui_2587 at 2740.362 kb on - strand, within Dsui_2587 at 2740.471 kb on + strand at 2740.480 kb on - strand, within Dsui_2587 at 2740.508 kb on - strand, within Dsui_2587 at 2740.541 kb on + strand, within Dsui_2587 at 2740.572 kb on - strand, within Dsui_2587 at 2740.572 kb on - strand, within Dsui_2587 at 2740.631 kb on - strand, within Dsui_2587 at 2740.690 kb on - strand, within Dsui_2587 at 2740.741 kb on - strand, within Dsui_2587 at 2740.843 kb on + strand, within Dsui_2587 at 2740.843 kb on + strand, within Dsui_2587 at 2740.850 kb on + strand, within Dsui_2587 at 2740.851 kb on - strand, within Dsui_2587 at 2740.902 kb on - strand, within Dsui_2587 at 2740.964 kb on - strand, within Dsui_2587 at 2740.978 kb on + strand, within Dsui_2587 at 2740.986 kb on - strand, within Dsui_2587 at 2741.077 kb on + strand, within Dsui_2587 at 2741.077 kb on + strand, within Dsui_2587 at 2741.194 kb on + strand, within Dsui_2587 at 2741.254 kb on + strand at 2741.266 kb on - strand at 2741.300 kb on + strand at 2741.308 kb on - strand at 2741.310 kb on + strand at 2741.318 kb on - strand at 2741.380 kb on + strand at 2741.931 kb on - strand, within Dsui_2588 at 2742.097 kb on + strand, within Dsui_2588 at 2742.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,739,138 - -0.9 2,739,165 + -0.9 2,739,171 - Dsui_2586 0.10 +0.7 2,739,258 - Dsui_2586 0.19 -0.3 2,739,258 - Dsui_2586 0.19 +0.7 2,739,289 + Dsui_2586 0.22 -0.9 2,739,361 + Dsui_2586 0.29 +0.7 2,739,427 + Dsui_2586 0.36 +0.7 2,739,430 - Dsui_2586 0.36 -0.9 2,739,773 - Dsui_2586 0.71 -0.3 2,739,899 + Dsui_2586 0.84 -0.9 2,739,942 - Dsui_2586 0.88 +0.7 2,740,011 - -0.3 2,740,069 - -0.3 2,740,219 - Dsui_2587 0.12 +0.7 2,740,285 - Dsui_2587 0.17 -0.3 2,740,285 - Dsui_2587 0.17 -2.1 2,740,362 - Dsui_2587 0.23 -2.1 2,740,471 + +0.7 2,740,480 - Dsui_2587 0.32 -0.9 2,740,508 - Dsui_2587 0.34 -0.9 2,740,541 + Dsui_2587 0.36 -0.3 2,740,572 - Dsui_2587 0.39 -0.3 2,740,572 - Dsui_2587 0.39 +0.7 2,740,631 - Dsui_2587 0.43 +0.7 2,740,690 - Dsui_2587 0.48 +0.7 2,740,741 - Dsui_2587 0.51 -2.3 2,740,843 + Dsui_2587 0.59 +0.7 2,740,843 + Dsui_2587 0.59 -0.3 2,740,850 + Dsui_2587 0.60 -0.3 2,740,851 - Dsui_2587 0.60 -0.9 2,740,902 - Dsui_2587 0.63 +0.7 2,740,964 - Dsui_2587 0.68 -0.9 2,740,978 + Dsui_2587 0.69 +0.7 2,740,986 - Dsui_2587 0.70 -0.3 2,741,077 + Dsui_2587 0.77 -0.9 2,741,077 + Dsui_2587 0.77 +0.7 2,741,194 + Dsui_2587 0.86 -0.9 2,741,254 + +0.7 2,741,266 - +0.7 2,741,300 + -0.3 2,741,308 - -1.6 2,741,310 + -0.3 2,741,318 - -0.3 2,741,380 + +0.7 2,741,931 - Dsui_2588 0.61 -0.3 2,742,097 + Dsui_2588 0.81 -0.3 2,742,240 - -0.9
Or see this region's nucleotide sequence