Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2572 and Dsui_2573 are separated by 133 nucleotides Dsui_2573 and Dsui_2574 are separated by 68 nucleotides Dsui_2574 and Dsui_2575 are separated by 316 nucleotides
Dsui_2572: Dsui_2572 - conjugative coupling factor TraD, TOL family, at 2,721,455 to 2,723,548
_2572
Dsui_2573: Dsui_2573 - hypothetical protein, at 2,723,682 to 2,723,906
_2573
Dsui_2574: Dsui_2574 - integral membrane protein (PIN domain superfamily), at 2,723,975 to 2,725,099
_2574
Dsui_2575: Dsui_2575 - hypothetical protein, at 2,725,416 to 2,726,186
_2575
Position (kb)
2723
2724
2725
2726 Strain fitness (log2 ratio)
-2
-1
0
1 at 2722.987 kb on + strand, within Dsui_2572 at 2722.987 kb on + strand, within Dsui_2572 at 2722.995 kb on - strand, within Dsui_2572 at 2723.001 kb on - strand, within Dsui_2572 at 2723.002 kb on - strand, within Dsui_2572 at 2723.012 kb on + strand, within Dsui_2572 at 2723.017 kb on + strand, within Dsui_2572 at 2723.017 kb on + strand, within Dsui_2572 at 2723.017 kb on + strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.145 kb on + strand, within Dsui_2572 at 2723.153 kb on - strand, within Dsui_2572 at 2723.204 kb on + strand, within Dsui_2572 at 2723.231 kb on - strand, within Dsui_2572 at 2723.251 kb on + strand, within Dsui_2572 at 2723.295 kb on - strand, within Dsui_2572 at 2723.325 kb on - strand, within Dsui_2572 at 2723.325 kb on - strand, within Dsui_2572 at 2723.335 kb on - strand, within Dsui_2572 at 2723.382 kb on - strand at 2723.403 kb on - strand at 2723.413 kb on - strand at 2723.413 kb on - strand at 2723.515 kb on - strand at 2723.546 kb on - strand at 2723.690 kb on + strand at 2723.731 kb on - strand, within Dsui_2573 at 2723.773 kb on - strand, within Dsui_2573 at 2723.864 kb on + strand, within Dsui_2573 at 2723.872 kb on - strand, within Dsui_2573 at 2723.888 kb on + strand at 2723.903 kb on + strand at 2723.919 kb on - strand at 2723.921 kb on - strand at 2723.986 kb on - strand at 2724.005 kb on - strand at 2724.010 kb on - strand at 2724.018 kb on - strand at 2724.027 kb on + strand at 2724.033 kb on - strand at 2724.033 kb on - strand at 2724.040 kb on - strand at 2724.070 kb on + strand at 2724.097 kb on - strand, within Dsui_2574 at 2724.149 kb on + strand, within Dsui_2574 at 2724.149 kb on + strand, within Dsui_2574 at 2724.213 kb on + strand, within Dsui_2574 at 2724.277 kb on + strand, within Dsui_2574 at 2724.308 kb on + strand, within Dsui_2574 at 2724.342 kb on - strand, within Dsui_2574 at 2724.353 kb on + strand, within Dsui_2574 at 2724.476 kb on - strand, within Dsui_2574 at 2724.491 kb on - strand, within Dsui_2574 at 2724.520 kb on - strand, within Dsui_2574 at 2724.534 kb on - strand, within Dsui_2574 at 2724.573 kb on + strand, within Dsui_2574 at 2724.585 kb on + strand, within Dsui_2574 at 2724.593 kb on - strand, within Dsui_2574 at 2724.611 kb on - strand, within Dsui_2574 at 2724.613 kb on + strand, within Dsui_2574 at 2724.702 kb on + strand, within Dsui_2574 at 2724.708 kb on + strand, within Dsui_2574 at 2724.758 kb on - strand, within Dsui_2574 at 2724.787 kb on + strand, within Dsui_2574 at 2724.809 kb on + strand, within Dsui_2574 at 2724.817 kb on - strand, within Dsui_2574 at 2724.817 kb on - strand, within Dsui_2574 at 2724.827 kb on - strand, within Dsui_2574 at 2724.854 kb on + strand, within Dsui_2574 at 2724.862 kb on + strand, within Dsui_2574 at 2724.928 kb on + strand, within Dsui_2574 at 2724.980 kb on - strand, within Dsui_2574 at 2725.087 kb on - strand at 2725.103 kb on + strand at 2725.103 kb on + strand at 2725.103 kb on + strand at 2725.167 kb on - strand at 2725.169 kb on + strand at 2725.169 kb on - strand at 2725.171 kb on + strand at 2725.177 kb on - strand at 2725.213 kb on - strand at 2725.242 kb on + strand at 2725.338 kb on + strand at 2725.346 kb on - strand at 2725.435 kb on + strand at 2725.444 kb on - strand at 2725.464 kb on - strand at 2725.537 kb on - strand, within Dsui_2575 at 2725.555 kb on + strand, within Dsui_2575 at 2725.560 kb on + strand, within Dsui_2575 at 2725.561 kb on + strand, within Dsui_2575 at 2725.563 kb on - strand, within Dsui_2575 at 2725.598 kb on + strand, within Dsui_2575 at 2725.628 kb on + strand, within Dsui_2575 at 2725.636 kb on - strand, within Dsui_2575 at 2725.665 kb on + strand, within Dsui_2575 at 2725.675 kb on + strand, within Dsui_2575 at 2725.762 kb on + strand, within Dsui_2575 at 2725.767 kb on + strand, within Dsui_2575 at 2725.805 kb on - strand, within Dsui_2575 at 2725.825 kb on + strand, within Dsui_2575 at 2725.869 kb on + strand, within Dsui_2575 at 2725.875 kb on - strand, within Dsui_2575 at 2725.905 kb on - strand, within Dsui_2575 at 2725.922 kb on - strand, within Dsui_2575
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,722,987 + Dsui_2572 0.73 -1.6 2,722,987 + Dsui_2572 0.73 -1.6 2,722,995 - Dsui_2572 0.74 +0.7 2,723,001 - Dsui_2572 0.74 +0.7 2,723,002 - Dsui_2572 0.74 -0.9 2,723,012 + Dsui_2572 0.74 -0.3 2,723,017 + Dsui_2572 0.75 -0.9 2,723,017 + Dsui_2572 0.75 +0.7 2,723,017 + Dsui_2572 0.75 +0.7 2,723,025 - Dsui_2572 0.75 -1.6 2,723,025 - Dsui_2572 0.75 +0.7 2,723,025 - Dsui_2572 0.75 -0.3 2,723,025 - Dsui_2572 0.75 +0.7 2,723,145 + Dsui_2572 0.81 +0.7 2,723,153 - Dsui_2572 0.81 +0.7 2,723,204 + Dsui_2572 0.84 +0.7 2,723,231 - Dsui_2572 0.85 -1.6 2,723,251 + Dsui_2572 0.86 +0.7 2,723,295 - Dsui_2572 0.88 +0.7 2,723,325 - Dsui_2572 0.89 +0.7 2,723,325 - Dsui_2572 0.89 -1.3 2,723,335 - Dsui_2572 0.90 -0.9 2,723,382 - -1.3 2,723,403 - +0.7 2,723,413 - +0.7 2,723,413 - -0.3 2,723,515 - +0.7 2,723,546 - +0.7 2,723,690 + -0.5 2,723,731 - Dsui_2573 0.22 -0.3 2,723,773 - Dsui_2573 0.40 +0.7 2,723,864 + Dsui_2573 0.81 -0.5 2,723,872 - Dsui_2573 0.84 +0.7 2,723,888 + +0.1 2,723,903 + +0.1 2,723,919 - -0.3 2,723,921 - -0.9 2,723,986 - -2.5 2,724,005 - +0.7 2,724,010 - +0.7 2,724,018 - -0.3 2,724,027 + -0.3 2,724,033 - -1.3 2,724,033 - +0.7 2,724,040 - +0.7 2,724,070 + -0.3 2,724,097 - Dsui_2574 0.11 -1.9 2,724,149 + Dsui_2574 0.15 +0.7 2,724,149 + Dsui_2574 0.15 +0.7 2,724,213 + Dsui_2574 0.21 +0.7 2,724,277 + Dsui_2574 0.27 -0.9 2,724,308 + Dsui_2574 0.30 +0.7 2,724,342 - Dsui_2574 0.33 +0.7 2,724,353 + Dsui_2574 0.34 +0.7 2,724,476 - Dsui_2574 0.45 -0.3 2,724,491 - Dsui_2574 0.46 -1.3 2,724,520 - Dsui_2574 0.48 -0.3 2,724,534 - Dsui_2574 0.50 -1.3 2,724,573 + Dsui_2574 0.53 +0.7 2,724,585 + Dsui_2574 0.54 +0.7 2,724,593 - Dsui_2574 0.55 +0.7 2,724,611 - Dsui_2574 0.57 +0.7 2,724,613 + Dsui_2574 0.57 -0.3 2,724,702 + Dsui_2574 0.65 +0.7 2,724,708 + Dsui_2574 0.65 -1.9 2,724,758 - Dsui_2574 0.70 -0.3 2,724,787 + Dsui_2574 0.72 -1.3 2,724,809 + Dsui_2574 0.74 +0.7 2,724,817 - Dsui_2574 0.75 +0.7 2,724,817 - Dsui_2574 0.75 -0.3 2,724,827 - Dsui_2574 0.76 -0.3 2,724,854 + Dsui_2574 0.78 -0.3 2,724,862 + Dsui_2574 0.79 +0.7 2,724,928 + Dsui_2574 0.85 -0.6 2,724,980 - Dsui_2574 0.89 -0.9 2,725,087 - -0.3 2,725,103 + -0.3 2,725,103 + -1.6 2,725,103 + -1.3 2,725,167 - +0.7 2,725,169 + +0.7 2,725,169 - -0.3 2,725,171 + +0.7 2,725,177 - -2.3 2,725,213 - -1.3 2,725,242 + -0.3 2,725,338 + +0.7 2,725,346 - +0.7 2,725,435 + +0.7 2,725,444 - +0.7 2,725,464 - -0.3 2,725,537 - Dsui_2575 0.16 -1.9 2,725,555 + Dsui_2575 0.18 +0.7 2,725,560 + Dsui_2575 0.19 +0.7 2,725,561 + Dsui_2575 0.19 +0.7 2,725,563 - Dsui_2575 0.19 +0.7 2,725,598 + Dsui_2575 0.24 -1.9 2,725,628 + Dsui_2575 0.27 +0.7 2,725,636 - Dsui_2575 0.29 -0.9 2,725,665 + Dsui_2575 0.32 -0.3 2,725,675 + Dsui_2575 0.34 +0.7 2,725,762 + Dsui_2575 0.45 +0.7 2,725,767 + Dsui_2575 0.46 +0.7 2,725,805 - Dsui_2575 0.50 +0.7 2,725,825 + Dsui_2575 0.53 +0.7 2,725,869 + Dsui_2575 0.59 -0.3 2,725,875 - Dsui_2575 0.60 -0.9 2,725,905 - Dsui_2575 0.63 -1.6 2,725,922 - Dsui_2575 0.66 +0.7
Or see this region's nucleotide sequence