Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2550 and Dsui_2551 are separated by 67 nucleotides Dsui_2551 and Dsui_2552 are separated by 172 nucleotides Dsui_2552 and Dsui_2553 overlap by 4 nucleotides Dsui_2553 and Dsui_2554 are separated by 127 nucleotides Dsui_2554 and Dsui_2555 overlap by 4 nucleotides Dsui_2555 and Dsui_2556 are separated by 87 nucleotides
Dsui_2550: Dsui_2550 - Protein of unknown function (DUF2726), at 2,703,131 to 2,703,694
_2550
Dsui_2551: Dsui_2551 - Helix-destabilising protein, at 2,703,762 to 2,704,055
_2551
Dsui_2552: Dsui_2552 - hypothetical protein, at 2,704,228 to 2,704,503
_2552
Dsui_2553: Dsui_2553 - Phage X family/Phage replication protein CRI, at 2,704,500 to 2,705,582
_2553
Dsui_2554: Dsui_2554 - hypothetical protein, at 2,705,710 to 2,705,973
_2554
Dsui_2555: Dsui_2555 - Bacteriophage coat protein B, at 2,705,970 to 2,706,167
_2555
Dsui_2556: Dsui_2556 - hypothetical protein, at 2,706,255 to 2,707,346
_2556
Position (kb)
2704
2705
2706 Strain fitness (log2 ratio)
-2
-1
0
1 at 2703.542 kb on - strand, within Dsui_2550 at 2703.605 kb on - strand, within Dsui_2550 at 2703.786 kb on + strand at 2703.794 kb on - strand, within Dsui_2551 at 2703.794 kb on - strand, within Dsui_2551 at 2703.794 kb on - strand, within Dsui_2551 at 2703.830 kb on + strand at 2703.838 kb on - strand, within Dsui_2551 at 2703.876 kb on - strand, within Dsui_2551 at 2703.946 kb on - strand, within Dsui_2551 at 2703.955 kb on + strand, within Dsui_2551 at 2703.955 kb on + strand, within Dsui_2551 at 2703.955 kb on + strand, within Dsui_2551 at 2703.963 kb on - strand, within Dsui_2551 at 2703.963 kb on - strand, within Dsui_2551 at 2704.040 kb on + strand at 2704.048 kb on - strand at 2704.065 kb on - strand at 2704.065 kb on - strand at 2704.065 kb on - strand at 2704.145 kb on - strand at 2704.248 kb on + strand at 2704.606 kb on - strand at 2704.815 kb on + strand, within Dsui_2553 at 2704.855 kb on + strand, within Dsui_2553 at 2704.864 kb on - strand, within Dsui_2553 at 2704.869 kb on - strand, within Dsui_2553 at 2705.024 kb on - strand, within Dsui_2553 at 2705.077 kb on + strand, within Dsui_2553 at 2705.335 kb on + strand, within Dsui_2553 at 2705.527 kb on - strand at 2705.577 kb on + strand at 2705.680 kb on - strand at 2705.681 kb on - strand at 2705.753 kb on - strand, within Dsui_2554 at 2705.824 kb on + strand, within Dsui_2554 at 2705.894 kb on + strand, within Dsui_2554 at 2705.939 kb on + strand at 2706.007 kb on + strand, within Dsui_2555 at 2706.015 kb on - strand, within Dsui_2555 at 2706.043 kb on - strand, within Dsui_2555 at 2706.146 kb on - strand, within Dsui_2555 at 2706.170 kb on + strand at 2706.516 kb on - strand, within Dsui_2556 at 2706.542 kb on - strand, within Dsui_2556 at 2706.542 kb on - strand, within Dsui_2556 at 2706.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,703,542 - Dsui_2550 0.73 +0.7 2,703,605 - Dsui_2550 0.84 -0.3 2,703,786 + -0.9 2,703,794 - Dsui_2551 0.11 -1.3 2,703,794 - Dsui_2551 0.11 -1.3 2,703,794 - Dsui_2551 0.11 -0.3 2,703,830 + +0.7 2,703,838 - Dsui_2551 0.26 -0.9 2,703,876 - Dsui_2551 0.39 -0.9 2,703,946 - Dsui_2551 0.63 +0.7 2,703,955 + Dsui_2551 0.66 -0.3 2,703,955 + Dsui_2551 0.66 +0.7 2,703,955 + Dsui_2551 0.66 +0.7 2,703,963 - Dsui_2551 0.68 +0.7 2,703,963 - Dsui_2551 0.68 +0.7 2,704,040 + -0.3 2,704,048 - +0.7 2,704,065 - -0.3 2,704,065 - -0.3 2,704,065 - +0.7 2,704,145 - -1.9 2,704,248 + +0.7 2,704,606 - +0.7 2,704,815 + Dsui_2553 0.29 +0.7 2,704,855 + Dsui_2553 0.33 -0.3 2,704,864 - Dsui_2553 0.34 -1.3 2,704,869 - Dsui_2553 0.34 +0.7 2,705,024 - Dsui_2553 0.48 -0.9 2,705,077 + Dsui_2553 0.53 -0.3 2,705,335 + Dsui_2553 0.77 -0.3 2,705,527 - -0.9 2,705,577 + +0.7 2,705,680 - -0.9 2,705,681 - +0.7 2,705,753 - Dsui_2554 0.16 -0.3 2,705,824 + Dsui_2554 0.43 +0.7 2,705,894 + Dsui_2554 0.70 -0.9 2,705,939 + +0.7 2,706,007 + Dsui_2555 0.19 +0.7 2,706,015 - Dsui_2555 0.23 -0.3 2,706,043 - Dsui_2555 0.37 +0.7 2,706,146 - Dsui_2555 0.89 +0.7 2,706,170 + +0.7 2,706,516 - Dsui_2556 0.24 +0.7 2,706,542 - Dsui_2556 0.26 -0.3 2,706,542 - Dsui_2556 0.26 -0.3 2,706,542 - +0.7
Or see this region's nucleotide sequence