Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2503 and Dsui_2504 are separated by 244 nucleotides Dsui_2504 and Dsui_2505 overlap by 17 nucleotides Dsui_2505 and Dsui_2506 are separated by 93 nucleotides
Dsui_2503: Dsui_2503 - Mu transposase/integrase, at 2,650,240 to 2,651,922
_2503
Dsui_2504: Dsui_2504 - hypothetical protein, at 2,652,167 to 2,652,547
_2504
Dsui_2505: Dsui_2505 - putative transcriptional regulator, at 2,652,531 to 2,652,830
_2505
Dsui_2506: Dsui_2506 - transposase, IS30 family, at 2,652,924 to 2,654,084
_2506
Position (kb)
2652
2653 Strain fitness (log2 ratio)
-2
-1
0
1 at 2651.250 kb on + strand at 2651.457 kb on - strand, within Dsui_2503 at 2651.474 kb on + strand, within Dsui_2503 at 2651.492 kb on - strand, within Dsui_2503 at 2651.717 kb on - strand, within Dsui_2503 at 2651.761 kb on - strand at 2651.771 kb on - strand at 2651.771 kb on - strand at 2651.816 kb on - strand at 2651.945 kb on + strand at 2651.945 kb on + strand at 2651.965 kb on - strand at 2652.015 kb on + strand at 2652.015 kb on - strand at 2652.041 kb on + strand at 2652.206 kb on + strand, within Dsui_2504 at 2652.278 kb on + strand, within Dsui_2504 at 2652.314 kb on - strand at 2652.417 kb on + strand, within Dsui_2504 at 2652.443 kb on + strand, within Dsui_2504 at 2652.462 kb on + strand, within Dsui_2504 at 2652.470 kb on - strand, within Dsui_2504 at 2652.495 kb on - strand at 2652.495 kb on - strand, within Dsui_2504 at 2652.495 kb on - strand, within Dsui_2504 at 2652.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,651,250 + +0.7 2,651,457 - Dsui_2503 0.72 +0.7 2,651,474 + Dsui_2503 0.73 -1.3 2,651,492 - Dsui_2503 0.74 +1.7 2,651,717 - Dsui_2503 0.88 -0.3 2,651,761 - +0.7 2,651,771 - -1.3 2,651,771 - +0.7 2,651,816 - +0.7 2,651,945 + +0.7 2,651,945 + -2.3 2,651,965 - -0.3 2,652,015 + +0.7 2,652,015 - -0.3 2,652,041 + +0.7 2,652,206 + Dsui_2504 0.10 -0.0 2,652,278 + Dsui_2504 0.29 +0.0 2,652,314 - -0.8 2,652,417 + Dsui_2504 0.66 -0.1 2,652,443 + Dsui_2504 0.72 -0.3 2,652,462 + Dsui_2504 0.77 +1.0 2,652,470 - Dsui_2504 0.80 -0.3 2,652,495 - +0.7 2,652,495 - Dsui_2504 0.86 -0.8 2,652,495 - Dsui_2504 0.86 +0.7 2,652,956 - +0.7
Or see this region's nucleotide sequence