Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2425 and Dsui_2426 are separated by 184 nucleotides Dsui_2426 and Dsui_2427 are separated by 15 nucleotides Dsui_2427 and Dsui_2428 are separated by 185 nucleotides Dsui_2428 and Dsui_2429 overlap by 4 nucleotides
Dsui_2425: Dsui_2425 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,583,946 to 2,585,865
_2425
Dsui_2426: Dsui_2426 - hypothetical protein, at 2,586,050 to 2,586,832
_2426
Dsui_2427: Dsui_2427 - molybdenum cofactor biosynthesis protein A, at 2,586,848 to 2,587,921
_2427
Dsui_2428: Dsui_2428 - cyclic nucleotide-binding protein, at 2,588,107 to 2,588,583
_2428
Dsui_2429: Dsui_2429 - putative permease, at 2,588,580 to 2,589,719
_2429
Position (kb)
2586
2587
2588 Strain fitness (log2 ratio)
-2
-1
0
1 at 2585.877 kb on + strand at 2585.877 kb on + strand at 2585.885 kb on - strand at 2585.885 kb on - strand at 2585.897 kb on - strand at 2585.968 kb on - strand at 2585.983 kb on + strand at 2586.032 kb on + strand at 2586.098 kb on - strand at 2586.127 kb on + strand at 2586.231 kb on + strand, within Dsui_2426 at 2586.277 kb on + strand, within Dsui_2426 at 2586.279 kb on - strand, within Dsui_2426 at 2586.280 kb on - strand, within Dsui_2426 at 2586.301 kb on - strand, within Dsui_2426 at 2586.321 kb on + strand, within Dsui_2426 at 2586.329 kb on - strand, within Dsui_2426 at 2586.361 kb on + strand, within Dsui_2426 at 2586.369 kb on + strand at 2586.369 kb on + strand at 2586.377 kb on - strand, within Dsui_2426 at 2586.396 kb on + strand, within Dsui_2426 at 2586.510 kb on - strand, within Dsui_2426 at 2586.544 kb on - strand at 2586.602 kb on - strand, within Dsui_2426 at 2586.629 kb on + strand at 2586.629 kb on + strand, within Dsui_2426 at 2586.951 kb on - strand at 2587.016 kb on - strand, within Dsui_2427 at 2587.021 kb on - strand, within Dsui_2427 at 2587.047 kb on + strand, within Dsui_2427 at 2587.068 kb on - strand, within Dsui_2427 at 2587.292 kb on + strand, within Dsui_2427 at 2587.294 kb on - strand, within Dsui_2427 at 2587.317 kb on + strand, within Dsui_2427 at 2587.367 kb on - strand, within Dsui_2427 at 2587.500 kb on - strand, within Dsui_2427 at 2587.511 kb on - strand, within Dsui_2427 at 2587.555 kb on + strand, within Dsui_2427 at 2587.600 kb on + strand at 2587.608 kb on - strand, within Dsui_2427 at 2587.652 kb on + strand, within Dsui_2427 at 2587.656 kb on - strand, within Dsui_2427 at 2587.696 kb on + strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.739 kb on - strand, within Dsui_2427 at 2587.787 kb on - strand, within Dsui_2427 at 2587.857 kb on - strand at 2587.916 kb on - strand at 2588.223 kb on + strand, within Dsui_2428 at 2588.287 kb on - strand at 2588.332 kb on + strand, within Dsui_2428 at 2588.401 kb on + strand, within Dsui_2428 at 2588.540 kb on + strand at 2588.543 kb on - strand at 2588.610 kb on - strand at 2588.662 kb on + strand at 2588.667 kb on + strand at 2588.678 kb on - strand at 2588.695 kb on + strand, within Dsui_2429 at 2588.739 kb on + strand, within Dsui_2429
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,585,877 + +0.8 2,585,877 + -0.8 2,585,885 - -0.8 2,585,885 - -1.6 2,585,897 - -0.2 2,585,968 - +0.8 2,585,983 + +0.8 2,586,032 + -0.2 2,586,098 - -2.0 2,586,127 + -1.2 2,586,231 + Dsui_2426 0.23 +0.8 2,586,277 + Dsui_2426 0.29 -2.6 2,586,279 - Dsui_2426 0.29 -0.2 2,586,280 - Dsui_2426 0.29 -2.0 2,586,301 - Dsui_2426 0.32 +0.8 2,586,321 + Dsui_2426 0.35 -0.8 2,586,329 - Dsui_2426 0.36 +0.8 2,586,361 + Dsui_2426 0.40 +0.8 2,586,369 + +0.8 2,586,369 + +0.8 2,586,377 - Dsui_2426 0.42 +0.8 2,586,396 + Dsui_2426 0.44 -2.0 2,586,510 - Dsui_2426 0.59 -1.8 2,586,544 - +0.8 2,586,602 - Dsui_2426 0.70 -0.2 2,586,629 + -0.8 2,586,629 + Dsui_2426 0.74 +0.8 2,586,951 - -2.7 2,587,016 - Dsui_2427 0.16 -1.8 2,587,021 - Dsui_2427 0.16 -0.4 2,587,047 + Dsui_2427 0.19 -1.8 2,587,068 - Dsui_2427 0.20 -1.5 2,587,292 + Dsui_2427 0.41 -0.8 2,587,294 - Dsui_2427 0.42 -0.9 2,587,317 + Dsui_2427 0.44 -0.2 2,587,367 - Dsui_2427 0.48 -1.0 2,587,500 - Dsui_2427 0.61 +0.2 2,587,511 - Dsui_2427 0.62 -1.5 2,587,555 + Dsui_2427 0.66 -1.2 2,587,600 + +0.8 2,587,608 - Dsui_2427 0.71 -1.6 2,587,652 + Dsui_2427 0.75 -1.2 2,587,656 - Dsui_2427 0.75 -0.5 2,587,696 + Dsui_2427 0.79 -0.2 2,587,704 - Dsui_2427 0.80 -1.0 2,587,704 - Dsui_2427 0.80 -1.6 2,587,704 - Dsui_2427 0.80 -1.4 2,587,739 - Dsui_2427 0.83 -0.6 2,587,787 - Dsui_2427 0.87 +0.4 2,587,857 - -1.6 2,587,916 - -1.1 2,588,223 + Dsui_2428 0.24 -0.2 2,588,287 - -1.2 2,588,332 + Dsui_2428 0.47 -0.2 2,588,401 + Dsui_2428 0.62 +0.8 2,588,540 + -0.2 2,588,543 - -0.2 2,588,610 - -0.2 2,588,662 + -1.2 2,588,667 + +0.8 2,588,678 - +0.8 2,588,695 + Dsui_2429 0.10 -1.6 2,588,739 + Dsui_2429 0.14 +0.8
Or see this region's nucleotide sequence