Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2400 and Dsui_2401 are separated by 13 nucleotides Dsui_2401 and Dsui_2402 are separated by 299 nucleotides
Dsui_2400: Dsui_2400 - signal transduction histidine kinase, at 2,552,519 to 2,553,847
_2400
Dsui_2401: Dsui_2401 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,553,861 to 2,554,595
_2401
Dsui_2402: Dsui_2402 - hypothetical protein, at 2,554,895 to 2,555,281
_2402
Position (kb)
2553
2554
2555 Strain fitness (log2 ratio)
-2
-1
0
1 at 2553.100 kb on - strand, within Dsui_2400 at 2553.186 kb on + strand at 2553.220 kb on - strand, within Dsui_2400 at 2553.322 kb on + strand, within Dsui_2400 at 2553.330 kb on - strand, within Dsui_2400 at 2553.373 kb on - strand, within Dsui_2400 at 2553.380 kb on - strand, within Dsui_2400 at 2553.485 kb on + strand at 2553.528 kb on + strand at 2553.586 kb on + strand at 2553.587 kb on - strand, within Dsui_2400 at 2553.650 kb on + strand at 2553.715 kb on - strand at 2553.737 kb on - strand at 2554.000 kb on - strand, within Dsui_2401 at 2554.029 kb on + strand at 2554.075 kb on + strand at 2554.162 kb on - strand, within Dsui_2401 at 2554.259 kb on - strand, within Dsui_2401 at 2554.284 kb on - strand, within Dsui_2401 at 2554.485 kb on - strand, within Dsui_2401 at 2554.680 kb on + strand at 2554.719 kb on - strand at 2554.855 kb on + strand at 2554.898 kb on + strand at 2555.216 kb on + strand, within Dsui_2402 at 2555.364 kb on + strand at 2555.372 kb on + strand at 2555.413 kb on - strand at 2555.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,553,100 - Dsui_2400 0.44 -1.8 2,553,186 + +0.8 2,553,220 - Dsui_2400 0.53 -1.8 2,553,322 + Dsui_2400 0.60 -1.8 2,553,330 - Dsui_2400 0.61 -0.6 2,553,373 - Dsui_2400 0.64 -0.2 2,553,380 - Dsui_2400 0.65 -1.0 2,553,485 + -1.6 2,553,528 + +0.8 2,553,586 + +0.8 2,553,587 - Dsui_2400 0.80 -1.6 2,553,650 + -0.2 2,553,715 - +0.1 2,553,737 - -2.1 2,554,000 - Dsui_2401 0.19 -0.4 2,554,029 + -0.2 2,554,075 + -0.2 2,554,162 - Dsui_2401 0.41 -1.2 2,554,259 - Dsui_2401 0.54 -0.2 2,554,284 - Dsui_2401 0.58 -1.3 2,554,485 - Dsui_2401 0.85 -2.5 2,554,680 + -1.8 2,554,719 - +0.8 2,554,855 + +0.8 2,554,898 + -0.2 2,555,216 + Dsui_2402 0.83 -0.7 2,555,364 + -1.2 2,555,372 + +0.8 2,555,413 - +0.8 2,555,413 - +0.8
Or see this region's nucleotide sequence