Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2321 and Dsui_2322 are separated by 45 nucleotides Dsui_2322 and Dsui_2323 are separated by 3 nucleotides Dsui_2323 and Dsui_2324 are separated by 54 nucleotides Dsui_2324 and Dsui_2325 are separated by 70 nucleotides
Dsui_2321: Dsui_2321 - site-specific recombinase, at 2,476,071 to 2,478,146
_2321
Dsui_2322: Dsui_2322 - hypothetical protein, at 2,478,192 to 2,478,968
_2322
Dsui_2323: Dsui_2323 - protein of unknown function (DUF1857), at 2,478,972 to 2,479,445
_2323
Dsui_2324: Dsui_2324 - hypothetical protein, at 2,479,500 to 2,479,868
_2324
Dsui_2325: Dsui_2325 - hypothetical protein, at 2,479,939 to 2,480,343
_2325
Position (kb)
2478
2479
2480 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2478.051 kb on - strand at 2478.129 kb on - strand at 2478.247 kb on + strand at 2478.377 kb on + strand, within Dsui_2322 at 2478.382 kb on + strand, within Dsui_2322 at 2478.415 kb on + strand, within Dsui_2322 at 2478.532 kb on - strand, within Dsui_2322 at 2478.568 kb on - strand, within Dsui_2322 at 2478.574 kb on - strand, within Dsui_2322 at 2478.593 kb on + strand, within Dsui_2322 at 2478.617 kb on + strand, within Dsui_2322 at 2478.625 kb on - strand at 2478.673 kb on + strand, within Dsui_2322 at 2478.682 kb on + strand, within Dsui_2322 at 2478.724 kb on - strand, within Dsui_2322 at 2478.749 kb on - strand, within Dsui_2322 at 2478.776 kb on + strand, within Dsui_2322 at 2478.837 kb on - strand at 2478.858 kb on + strand, within Dsui_2322 at 2478.877 kb on + strand, within Dsui_2322 at 2478.909 kb on - strand at 2478.956 kb on + strand at 2478.970 kb on - strand at 2479.043 kb on + strand, within Dsui_2323 at 2479.096 kb on + strand, within Dsui_2323 at 2479.108 kb on - strand at 2479.170 kb on + strand, within Dsui_2323 at 2479.228 kb on + strand, within Dsui_2323 at 2479.354 kb on + strand, within Dsui_2323 at 2479.374 kb on + strand, within Dsui_2323 at 2479.399 kb on + strand at 2479.407 kb on - strand at 2479.435 kb on + strand at 2479.570 kb on - strand, within Dsui_2324 at 2479.600 kb on + strand, within Dsui_2324 at 2479.673 kb on + strand, within Dsui_2324 at 2479.712 kb on + strand, within Dsui_2324 at 2479.753 kb on + strand, within Dsui_2324 at 2479.795 kb on - strand, within Dsui_2324 at 2479.837 kb on + strand at 2479.884 kb on - strand at 2480.024 kb on + strand at 2480.202 kb on - strand, within Dsui_2325 at 2480.207 kb on - strand, within Dsui_2325 at 2480.238 kb on - strand, within Dsui_2325 at 2480.257 kb on - strand, within Dsui_2325 at 2480.288 kb on + strand at 2480.296 kb on - strand, within Dsui_2325 at 2480.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,478,051 - -1.5 2,478,129 - -0.2 2,478,247 + -2.0 2,478,377 + Dsui_2322 0.24 -0.4 2,478,382 + Dsui_2322 0.24 -0.2 2,478,415 + Dsui_2322 0.29 -0.8 2,478,532 - Dsui_2322 0.44 -0.8 2,478,568 - Dsui_2322 0.48 -0.2 2,478,574 - Dsui_2322 0.49 -0.8 2,478,593 + Dsui_2322 0.52 -2.2 2,478,617 + Dsui_2322 0.55 +0.8 2,478,625 - +0.8 2,478,673 + Dsui_2322 0.62 -0.2 2,478,682 + Dsui_2322 0.63 -1.7 2,478,724 - Dsui_2322 0.68 -0.8 2,478,749 - Dsui_2322 0.72 +0.8 2,478,776 + Dsui_2322 0.75 -1.2 2,478,837 - +0.8 2,478,858 + Dsui_2322 0.86 -1.2 2,478,877 + Dsui_2322 0.88 -1.8 2,478,909 - -0.8 2,478,956 + +0.2 2,478,970 - -0.2 2,479,043 + Dsui_2323 0.15 -1.9 2,479,096 + Dsui_2323 0.26 -2.4 2,479,108 - +0.8 2,479,170 + Dsui_2323 0.42 -1.5 2,479,228 + Dsui_2323 0.54 +0.8 2,479,354 + Dsui_2323 0.81 +1.8 2,479,374 + Dsui_2323 0.85 -2.7 2,479,399 + -0.2 2,479,407 - +0.8 2,479,435 + -1.5 2,479,570 - Dsui_2324 0.19 -0.2 2,479,600 + Dsui_2324 0.27 -1.0 2,479,673 + Dsui_2324 0.47 -0.4 2,479,712 + Dsui_2324 0.57 -0.7 2,479,753 + Dsui_2324 0.69 -1.2 2,479,795 - Dsui_2324 0.80 -0.8 2,479,837 + -0.1 2,479,884 - -1.5 2,480,024 + -0.2 2,480,202 - Dsui_2325 0.65 +0.2 2,480,207 - Dsui_2325 0.66 -1.8 2,480,238 - Dsui_2325 0.74 +0.8 2,480,257 - Dsui_2325 0.79 -2.0 2,480,288 + -0.2 2,480,296 - Dsui_2325 0.88 -1.5 2,480,419 - -1.2
Or see this region's nucleotide sequence