Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2258 and Dsui_2259 are separated by 85 nucleotides Dsui_2259 and Dsui_2260 are separated by 348 nucleotides Dsui_2260 and Dsui_2261 are separated by 93 nucleotides Dsui_2261 and Dsui_2262 are separated by 69 nucleotides
Dsui_2258: Dsui_2258 - cupin domain-containing protein, at 2,407,586 to 2,407,921
_2258
Dsui_2259: Dsui_2259 - hypothetical protein, at 2,408,007 to 2,408,198
_2259
Dsui_2260: Dsui_2260 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,408,547 to 2,410,013
_2260
Dsui_2261: Dsui_2261 - putative flavin-nucleotide-binding protein, at 2,410,107 to 2,410,820
_2261
Dsui_2262: Dsui_2262 - hypothetical protein, at 2,410,890 to 2,411,495
_2262
Position (kb)
2408
2409
2410
2411 Strain fitness (log2 ratio)
-2
-1
0
1 at 2407.580 kb on - strand at 2407.614 kb on - strand at 2407.627 kb on + strand, within Dsui_2258 at 2407.982 kb on - strand at 2408.011 kb on - strand at 2408.059 kb on - strand, within Dsui_2259 at 2408.157 kb on - strand, within Dsui_2259 at 2408.191 kb on - strand at 2408.193 kb on - strand at 2408.590 kb on - strand at 2408.634 kb on + strand at 2408.639 kb on + strand at 2408.686 kb on - strand at 2408.766 kb on + strand at 2408.892 kb on - strand at 2408.939 kb on - strand at 2408.942 kb on + strand at 2408.996 kb on + strand, within Dsui_2260 at 2408.999 kb on + strand at 2409.004 kb on - strand, within Dsui_2260 at 2409.015 kb on - strand, within Dsui_2260 at 2409.022 kb on + strand at 2409.025 kb on - strand at 2409.135 kb on - strand at 2409.221 kb on + strand at 2409.237 kb on - strand, within Dsui_2260 at 2409.304 kb on - strand, within Dsui_2260 at 2409.416 kb on + strand at 2409.424 kb on - strand at 2409.424 kb on - strand, within Dsui_2260 at 2409.426 kb on + strand at 2409.482 kb on - strand at 2409.518 kb on - strand, within Dsui_2260 at 2409.563 kb on + strand, within Dsui_2260 at 2409.586 kb on - strand at 2409.650 kb on - strand at 2409.668 kb on - strand at 2409.781 kb on - strand at 2409.787 kb on + strand at 2409.818 kb on - strand at 2409.981 kb on - strand at 2410.111 kb on + strand at 2410.125 kb on + strand at 2410.126 kb on + strand at 2410.161 kb on - strand at 2410.247 kb on + strand at 2410.247 kb on + strand at 2410.267 kb on + strand at 2410.356 kb on + strand at 2410.408 kb on + strand at 2410.408 kb on + strand at 2410.436 kb on - strand at 2410.458 kb on + strand at 2410.591 kb on - strand at 2410.676 kb on - strand at 2410.761 kb on + strand at 2410.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,407,580 - -0.4 2,407,614 - -0.3 2,407,627 + Dsui_2258 0.12 -0.2 2,407,982 - -0.1 2,408,011 - +0.6 2,408,059 - Dsui_2259 0.27 -0.2 2,408,157 - Dsui_2259 0.78 -0.2 2,408,191 - +0.0 2,408,193 - -0.1 2,408,590 - +1.0 2,408,634 + -0.6 2,408,639 + +1.0 2,408,686 - -0.0 2,408,766 + -0.0 2,408,892 - +1.0 2,408,939 - +1.0 2,408,942 + +1.0 2,408,996 + Dsui_2260 0.31 -1.8 2,408,999 + +1.0 2,409,004 - Dsui_2260 0.31 +1.0 2,409,015 - Dsui_2260 0.32 -2.2 2,409,022 + +1.0 2,409,025 - +1.0 2,409,135 - +1.0 2,409,221 + -0.0 2,409,237 - Dsui_2260 0.47 -1.0 2,409,304 - Dsui_2260 0.52 -2.0 2,409,416 + +1.0 2,409,424 - -0.0 2,409,424 - Dsui_2260 0.60 +1.0 2,409,426 + -0.0 2,409,482 - -0.0 2,409,518 - Dsui_2260 0.66 -1.6 2,409,563 + Dsui_2260 0.69 +0.0 2,409,586 - +1.0 2,409,650 - +1.0 2,409,668 - -0.0 2,409,781 - -0.0 2,409,787 + +1.0 2,409,818 - +1.0 2,409,981 - -0.0 2,410,111 + -1.4 2,410,125 + +1.0 2,410,126 + -0.0 2,410,161 - +1.0 2,410,247 + +1.0 2,410,247 + -0.0 2,410,267 + +1.0 2,410,356 + +1.0 2,410,408 + +1.0 2,410,408 + -0.0 2,410,436 - -0.0 2,410,458 + -0.0 2,410,591 - +1.0 2,410,676 - +1.0 2,410,761 + +1.0 2,410,769 - -0.0
Or see this region's nucleotide sequence