Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2221 and Dsui_2222 are separated by 68 nucleotides Dsui_2222 and Dsui_2223 are separated by 58 nucleotides
Dsui_2221: Dsui_2221 - putative ATPase, at 2,361,593 to 2,362,708
_2221
Dsui_2222: Dsui_2222 - type II secretory pathway, component PulD, at 2,362,777 to 2,363,682
_2222
Dsui_2223: Dsui_2223 - putative ATP-dependent protease, at 2,363,741 to 2,366,266
_2223
Position (kb)
2362
2363
2364 Strain fitness (log2 ratio)
-2
-1
0
1 at 2361.833 kb on - strand at 2361.917 kb on + strand, within Dsui_2221 at 2362.164 kb on + strand, within Dsui_2221 at 2362.233 kb on + strand, within Dsui_2221 at 2362.233 kb on + strand, within Dsui_2221 at 2362.302 kb on + strand, within Dsui_2221 at 2362.325 kb on - strand at 2362.475 kb on + strand, within Dsui_2221 at 2362.604 kb on + strand at 2362.606 kb on + strand at 2362.606 kb on + strand at 2362.614 kb on - strand at 2362.614 kb on - strand at 2362.774 kb on + strand at 2362.808 kb on + strand at 2362.818 kb on + strand at 2362.847 kb on - strand at 2362.851 kb on + strand at 2362.985 kb on + strand, within Dsui_2222 at 2363.048 kb on + strand, within Dsui_2222 at 2363.058 kb on + strand, within Dsui_2222 at 2363.073 kb on - strand, within Dsui_2222 at 2363.222 kb on + strand, within Dsui_2222 at 2363.222 kb on + strand, within Dsui_2222 at 2363.361 kb on + strand, within Dsui_2222 at 2363.420 kb on - strand, within Dsui_2222 at 2363.426 kb on + strand, within Dsui_2222 at 2363.473 kb on + strand, within Dsui_2222 at 2363.513 kb on + strand, within Dsui_2222 at 2363.729 kb on + strand at 2363.774 kb on + strand at 2363.837 kb on - strand at 2363.837 kb on - strand at 2363.854 kb on + strand at 2363.861 kb on + strand at 2363.915 kb on + strand at 2363.971 kb on - strand at 2363.993 kb on - strand at 2364.050 kb on - strand at 2364.264 kb on - strand at 2364.319 kb on + strand, within Dsui_2223 at 2364.351 kb on - strand at 2364.362 kb on - strand, within Dsui_2223 at 2364.415 kb on - strand, within Dsui_2223 at 2364.463 kb on + strand, within Dsui_2223 at 2364.528 kb on - strand at 2364.529 kb on + strand at 2364.558 kb on - strand at 2364.572 kb on + strand, within Dsui_2223 at 2364.597 kb on + strand, within Dsui_2223
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,361,833 - +1.0 2,361,917 + Dsui_2221 0.29 -0.2 2,362,164 + Dsui_2221 0.51 -0.9 2,362,233 + Dsui_2221 0.57 -0.2 2,362,233 + Dsui_2221 0.57 -0.0 2,362,302 + Dsui_2221 0.64 -0.5 2,362,325 - +1.0 2,362,475 + Dsui_2221 0.79 -0.1 2,362,604 + -0.5 2,362,606 + -1.5 2,362,606 + +0.4 2,362,614 - +1.0 2,362,614 - +1.0 2,362,774 + -0.1 2,362,808 + -0.2 2,362,818 + -0.0 2,362,847 - +1.0 2,362,851 + +0.4 2,362,985 + Dsui_2222 0.23 +0.1 2,363,048 + Dsui_2222 0.30 +0.3 2,363,058 + Dsui_2222 0.31 -0.0 2,363,073 - Dsui_2222 0.33 -0.6 2,363,222 + Dsui_2222 0.49 +0.0 2,363,222 + Dsui_2222 0.49 +0.2 2,363,361 + Dsui_2222 0.64 -0.5 2,363,420 - Dsui_2222 0.71 +1.0 2,363,426 + Dsui_2222 0.72 -0.0 2,363,473 + Dsui_2222 0.77 +0.1 2,363,513 + Dsui_2222 0.81 -0.0 2,363,729 + +0.2 2,363,774 + +0.3 2,363,837 - -0.6 2,363,837 - +1.0 2,363,854 + -0.2 2,363,861 + -0.3 2,363,915 + -0.1 2,363,971 - +1.0 2,363,993 - +1.0 2,364,050 - +1.0 2,364,264 - +1.0 2,364,319 + Dsui_2223 0.23 +0.1 2,364,351 - +1.0 2,364,362 - Dsui_2223 0.25 -0.4 2,364,415 - Dsui_2223 0.27 -2.0 2,364,463 + Dsui_2223 0.29 +0.2 2,364,528 - -0.0 2,364,529 + +1.3 2,364,558 - -0.6 2,364,572 + Dsui_2223 0.33 +0.6 2,364,597 + Dsui_2223 0.34 +0.1
Or see this region's nucleotide sequence