Strain Fitness in Dechlorosoma suillum PS around Dsui_2130

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2128 and Dsui_2129 are separated by 84 nucleotidesDsui_2129 and Dsui_2130 are separated by 299 nucleotidesDsui_2130 and Dsui_2131 are separated by 352 nucleotidesDsui_2131 and Dsui_2132 are separated by 150 nucleotidesDsui_2132 and Dsui_2133 are separated by 105 nucleotidesDsui_2133 and Dsui_2134 are separated by 82 nucleotides Dsui_2128: Dsui_2128 - uncharacterized protein involved in outer membrane biogenesis, at 2,256,574 to 2,259,795 _2128 Dsui_2129: Dsui_2129 - bacterial nucleoid DNA-binding protein, at 2,259,880 to 2,260,164 _2129 Dsui_2130: Dsui_2130 - outer membrane receptor for ferrienterochelin and colicins, at 2,260,464 to 2,262,713 _2130 Dsui_2131: Dsui_2131 - tRNA-Arg, at 2,263,066 to 2,263,142 _2131 Dsui_2132: Dsui_2132 - tRNA-Arg, at 2,263,293 to 2,263,369 _2132 Dsui_2133: Dsui_2133 - tRNA-Ser, at 2,263,475 to 2,263,568 _2133 Dsui_2134: Dsui_2134 - aspartate kinase, monofunctional class, at 2,263,651 to 2,264,874 _2134 Position (kb) 2260 2261 2262 2263Strain fitness (log2 ratio) -2 -1 0 1at 2259.473 kb on + strandat 2259.485 kb on + strandat 2259.506 kb on + strandat 2259.514 kb on - strandat 2259.565 kb on + strandat 2259.596 kb on + strandat 2259.625 kb on + strandat 2259.672 kb on + strandat 2259.685 kb on - strandat 2259.690 kb on + strandat 2259.804 kb on - strandat 2260.248 kb on - strandat 2260.270 kb on + strandat 2260.515 kb on + strandat 2260.523 kb on - strandat 2260.523 kb on - strandat 2260.633 kb on + strandat 2260.694 kb on - strand, within Dsui_2130at 2260.762 kb on + strandat 2260.777 kb on - strand, within Dsui_2130at 2260.787 kb on - strand, within Dsui_2130at 2260.955 kb on - strand, within Dsui_2130at 2260.955 kb on - strand, within Dsui_2130at 2261.058 kb on - strand, within Dsui_2130at 2261.182 kb on + strandat 2261.236 kb on - strand, within Dsui_2130at 2261.385 kb on + strand, within Dsui_2130at 2261.457 kb on - strand, within Dsui_2130at 2261.457 kb on - strand, within Dsui_2130at 2261.467 kb on + strand, within Dsui_2130at 2261.543 kb on - strand, within Dsui_2130at 2261.561 kb on - strand, within Dsui_2130at 2261.569 kb on + strand, within Dsui_2130at 2261.584 kb on - strand, within Dsui_2130at 2261.639 kb on - strand, within Dsui_2130at 2261.669 kb on - strand, within Dsui_2130at 2261.782 kb on + strand, within Dsui_2130at 2261.830 kb on - strand, within Dsui_2130at 2261.836 kb on + strand, within Dsui_2130at 2261.890 kb on + strand, within Dsui_2130at 2261.938 kb on + strand, within Dsui_2130at 2262.059 kb on - strand, within Dsui_2130at 2262.125 kb on - strand, within Dsui_2130at 2262.190 kb on - strand, within Dsui_2130at 2262.292 kb on + strand, within Dsui_2130at 2262.352 kb on - strand, within Dsui_2130at 2262.371 kb on - strand, within Dsui_2130at 2262.483 kb on + strand, within Dsui_2130at 2262.516 kb on + strandat 2262.524 kb on - strandat 2262.633 kb on + strandat 2262.670 kb on - strandat 2262.681 kb on + strandat 2262.822 kb on + strandat 2262.829 kb on + strandat 2262.891 kb on + strandat 2263.128 kb on - strand, within Dsui_2131at 2263.130 kb on - strand, within Dsui_2131at 2263.190 kb on - strandat 2263.610 kb on - strandat 2263.611 kb on - strandat 2263.649 kb on + strandat 2263.649 kb on + strandat 2263.657 kb on - strandat 2263.657 kb on - strandat 2263.657 kb on - strandat 2263.660 kb on + strandat 2263.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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2,259,473 + +0.0
2,259,485 + -0.2
2,259,506 + -1.0
2,259,514 - -2.0
2,259,565 + -0.3
2,259,596 + -0.3
2,259,625 + -0.7
2,259,672 + -1.0
2,259,685 - -0.6
2,259,690 + -1.4
2,259,804 - +1.0
2,260,248 - -0.6
2,260,270 + +0.0
2,260,515 + -1.0
2,260,523 - +1.0
2,260,523 - +0.0
2,260,633 + -0.6
2,260,694 - Dsui_2130 0.10 -1.3
2,260,762 + +0.0
2,260,777 - Dsui_2130 0.14 -0.6
2,260,787 - Dsui_2130 0.14 -2.3
2,260,955 - Dsui_2130 0.22 -1.0
2,260,955 - Dsui_2130 0.22 -0.6
2,261,058 - Dsui_2130 0.26 +1.0
2,261,182 + +1.0
2,261,236 - Dsui_2130 0.34 +0.0
2,261,385 + Dsui_2130 0.41 +1.0
2,261,457 - Dsui_2130 0.44 +0.0
2,261,457 - Dsui_2130 0.44 +0.0
2,261,467 + Dsui_2130 0.45 +1.0
2,261,543 - Dsui_2130 0.48 -0.6
2,261,561 - Dsui_2130 0.49 -1.0
2,261,569 + Dsui_2130 0.49 -1.3
2,261,584 - Dsui_2130 0.50 +1.0
2,261,639 - Dsui_2130 0.52 +1.0
2,261,669 - Dsui_2130 0.54 -0.6
2,261,782 + Dsui_2130 0.59 +1.0
2,261,830 - Dsui_2130 0.61 +1.0
2,261,836 + Dsui_2130 0.61 +0.0
2,261,890 + Dsui_2130 0.63 -1.0
2,261,938 + Dsui_2130 0.66 -0.6
2,262,059 - Dsui_2130 0.71 +0.0
2,262,125 - Dsui_2130 0.74 -2.4
2,262,190 - Dsui_2130 0.77 -1.6
2,262,292 + Dsui_2130 0.81 +0.0
2,262,352 - Dsui_2130 0.84 +1.0
2,262,371 - Dsui_2130 0.85 -1.0
2,262,483 + Dsui_2130 0.90 +1.0
2,262,516 + +1.0
2,262,524 - -1.0
2,262,633 + -1.6
2,262,670 - +0.0
2,262,681 + +0.0
2,262,822 + +1.0
2,262,829 + -0.6
2,262,891 + -0.6
2,263,128 - Dsui_2131 0.81 +0.3
2,263,130 - Dsui_2131 0.83 +0.2
2,263,190 - -0.1
2,263,610 - +0.2
2,263,611 - -0.0
2,263,649 + +0.0
2,263,649 + +0.0
2,263,657 - +0.1
2,263,657 - +0.1
2,263,657 - -0.1
2,263,660 + -0.6
2,263,662 - -1.6

Or see this region's nucleotide sequence