Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2115 and Dsui_2116 are separated by 139 nucleotides Dsui_2116 and Dsui_2117 are separated by 160 nucleotides
Dsui_2115: Dsui_2115 - transcriptional regulator, at 2,240,517 to 2,241,470
_2115
Dsui_2116: Dsui_2116 - Fe-dependent oxidoreductase, alcohol dehydrogenase, at 2,241,610 to 2,242,758
_2116
Dsui_2117: Dsui_2117 - acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit, at 2,242,919 to 2,243,785
_2117
Position (kb)
2241
2242
2243 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2240.770 kb on + strand, within Dsui_2115 at 2240.817 kb on - strand, within Dsui_2115 at 2240.829 kb on - strand, within Dsui_2115 at 2240.963 kb on - strand, within Dsui_2115 at 2240.963 kb on - strand, within Dsui_2115 at 2241.200 kb on - strand, within Dsui_2115 at 2241.248 kb on + strand, within Dsui_2115 at 2241.404 kb on + strand at 2241.582 kb on + strand at 2241.592 kb on + strand at 2241.627 kb on + strand at 2241.635 kb on - strand at 2241.635 kb on - strand at 2241.761 kb on - strand at 2241.763 kb on + strand, within Dsui_2116 at 2241.794 kb on - strand at 2241.884 kb on - strand, within Dsui_2116 at 2241.884 kb on - strand, within Dsui_2116 at 2241.905 kb on + strand at 2242.053 kb on + strand at 2242.133 kb on - strand, within Dsui_2116 at 2242.330 kb on + strand, within Dsui_2116 at 2242.377 kb on + strand, within Dsui_2116 at 2242.406 kb on + strand at 2242.532 kb on - strand at 2242.580 kb on - strand at 2242.656 kb on + strand at 2242.668 kb on + strand at 2242.705 kb on + strand at 2242.705 kb on + strand at 2242.758 kb on + strand at 2242.761 kb on - strand at 2242.771 kb on + strand at 2242.781 kb on + strand at 2242.813 kb on - strand at 2242.895 kb on + strand at 2242.973 kb on - strand at 2243.024 kb on - strand at 2243.024 kb on - strand, within Dsui_2117 at 2243.076 kb on - strand at 2243.076 kb on - strand, within Dsui_2117 at 2243.270 kb on - strand, within Dsui_2117 at 2243.331 kb on + strand at 2243.337 kb on - strand at 2243.396 kb on - strand at 2243.396 kb on - strand, within Dsui_2117 at 2243.537 kb on - strand at 2243.712 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,240,770 + Dsui_2115 0.27 -1.8 2,240,817 - Dsui_2115 0.31 +0.0 2,240,829 - Dsui_2115 0.33 +3.0 2,240,963 - Dsui_2115 0.47 +1.0 2,240,963 - Dsui_2115 0.47 +1.0 2,241,200 - Dsui_2115 0.72 -1.8 2,241,248 + Dsui_2115 0.77 +1.0 2,241,404 + +0.0 2,241,582 + +1.0 2,241,592 + +0.0 2,241,627 + +0.0 2,241,635 - -1.0 2,241,635 - +0.0 2,241,761 - +0.0 2,241,763 + Dsui_2116 0.13 +1.0 2,241,794 - +1.0 2,241,884 - Dsui_2116 0.24 -0.5 2,241,884 - Dsui_2116 0.24 -0.5 2,241,905 + +1.0 2,242,053 + +1.0 2,242,133 - Dsui_2116 0.46 -2.0 2,242,330 + Dsui_2116 0.63 -1.3 2,242,377 + Dsui_2116 0.67 +1.0 2,242,406 + +1.0 2,242,532 - -0.5 2,242,580 - +1.0 2,242,656 + -0.5 2,242,668 + +1.0 2,242,705 + +1.0 2,242,705 + +1.0 2,242,758 + -0.5 2,242,761 - +0.0 2,242,771 + +0.0 2,242,781 + +1.0 2,242,813 - +1.0 2,242,895 + -1.0 2,242,973 - +0.0 2,243,024 - +1.0 2,243,024 - Dsui_2117 0.12 -0.5 2,243,076 - +1.0 2,243,076 - Dsui_2117 0.18 -1.0 2,243,270 - Dsui_2117 0.40 -0.5 2,243,331 + +1.0 2,243,337 - +1.0 2,243,396 - +1.0 2,243,396 - Dsui_2117 0.55 +1.0 2,243,537 - +1.0 2,243,712 + +1.0
Or see this region's nucleotide sequence