Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2110 and Dsui_2111 are separated by 113 nucleotides Dsui_2111 and Dsui_2112 overlap by 26 nucleotides Dsui_2112 and Dsui_2113 are separated by 61 nucleotides
Dsui_2110: Dsui_2110 - transposase, at 2,234,726 to 2,235,715
_2110
Dsui_2111: Dsui_2111 - cysteine desulfurase-like protein, SufS subfamily, at 2,235,829 to 2,237,721
_2111
Dsui_2112: Dsui_2112 - hypothetical protein, at 2,237,696 to 2,238,631
_2112
Dsui_2113: Dsui_2113 - serine acetyltransferase, at 2,238,693 to 2,239,691
_2113
Position (kb)
2235
2236
2237
2238 Strain fitness (log2 ratio)
-2
-1
0
1 at 2235.771 kb on - strand at 2235.826 kb on + strand at 2235.850 kb on + strand at 2235.976 kb on + strand at 2236.042 kb on - strand, within Dsui_2111 at 2236.072 kb on - strand, within Dsui_2111 at 2236.083 kb on - strand, within Dsui_2111 at 2236.200 kb on - strand, within Dsui_2111 at 2236.212 kb on - strand, within Dsui_2111 at 2236.241 kb on + strand at 2236.316 kb on + strand at 2236.521 kb on + strand, within Dsui_2111 at 2236.540 kb on - strand, within Dsui_2111 at 2236.626 kb on - strand, within Dsui_2111 at 2236.704 kb on - strand, within Dsui_2111 at 2236.782 kb on - strand, within Dsui_2111 at 2236.838 kb on + strand, within Dsui_2111 at 2236.884 kb on + strand at 2236.990 kb on + strand at 2236.990 kb on + strand at 2236.998 kb on - strand, within Dsui_2111 at 2237.011 kb on - strand, within Dsui_2111 at 2237.011 kb on - strand, within Dsui_2111 at 2237.011 kb on - strand at 2237.157 kb on - strand, within Dsui_2111 at 2237.202 kb on - strand at 2237.238 kb on - strand at 2237.315 kb on - strand at 2237.418 kb on + strand, within Dsui_2111 at 2237.571 kb on + strand at 2237.698 kb on + strand at 2237.754 kb on + strand at 2237.880 kb on + strand at 2237.895 kb on + strand, within Dsui_2112 at 2237.895 kb on + strand at 2238.287 kb on - strand at 2238.297 kb on - strand at 2238.331 kb on + strand at 2238.396 kb on + strand at 2238.396 kb on + strand at 2238.511 kb on + strand at 2238.536 kb on + strand at 2238.706 kb on + strand at 2238.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,235,771 - +1.0 2,235,826 + +1.0 2,235,850 + +1.0 2,235,976 + +0.0 2,236,042 - Dsui_2111 0.11 -2.1 2,236,072 - Dsui_2111 0.13 +0.0 2,236,083 - Dsui_2111 0.13 -0.5 2,236,200 - Dsui_2111 0.20 +1.0 2,236,212 - Dsui_2111 0.20 +1.0 2,236,241 + +1.0 2,236,316 + +1.0 2,236,521 + Dsui_2111 0.37 -1.0 2,236,540 - Dsui_2111 0.38 -1.0 2,236,626 - Dsui_2111 0.42 -0.5 2,236,704 - Dsui_2111 0.46 +1.0 2,236,782 - Dsui_2111 0.50 +0.0 2,236,838 + Dsui_2111 0.53 +1.0 2,236,884 + -0.5 2,236,990 + +1.0 2,236,990 + +0.0 2,236,998 - Dsui_2111 0.62 -0.5 2,237,011 - Dsui_2111 0.62 +1.0 2,237,011 - Dsui_2111 0.62 +1.0 2,237,011 - +1.0 2,237,157 - Dsui_2111 0.70 -1.5 2,237,202 - +0.0 2,237,238 - +1.0 2,237,315 - +1.0 2,237,418 + Dsui_2111 0.84 -1.3 2,237,571 + +1.0 2,237,698 + +1.0 2,237,754 + -0.5 2,237,880 + +1.0 2,237,895 + Dsui_2112 0.21 +1.0 2,237,895 + +1.0 2,238,287 - +1.0 2,238,297 - +1.0 2,238,331 + +1.0 2,238,396 + +1.0 2,238,396 + +1.0 2,238,511 + +1.0 2,238,536 + +1.0 2,238,706 + +0.0 2,238,714 - +0.0
Or see this region's nucleotide sequence