Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2106 and Dsui_2107 are separated by 573 nucleotides Dsui_2107 and Dsui_2108 are separated by 25 nucleotides
Dsui_2106: Dsui_2106 - hypothetical protein, at 2,229,452 to 2,229,871
_2106
Dsui_2107: Dsui_2107 - hypothetical protein, at 2,230,445 to 2,231,428
_2107
Dsui_2108: Dsui_2108 - superfamily II helicase, at 2,231,454 to 2,234,183
_2108
Position (kb)
2230
2231
2232 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2229.467 kb on + strand at 2229.467 kb on + strand at 2229.467 kb on + strand at 2229.467 kb on + strand at 2229.527 kb on + strand, within Dsui_2106 at 2229.556 kb on - strand, within Dsui_2106 at 2229.569 kb on - strand, within Dsui_2106 at 2229.587 kb on + strand, within Dsui_2106 at 2229.587 kb on + strand, within Dsui_2106 at 2229.595 kb on - strand, within Dsui_2106 at 2229.595 kb on - strand, within Dsui_2106 at 2229.595 kb on - strand, within Dsui_2106 at 2229.595 kb on - strand, within Dsui_2106 at 2229.595 kb on - strand, within Dsui_2106 at 2229.600 kb on + strand, within Dsui_2106 at 2229.613 kb on - strand, within Dsui_2106 at 2229.644 kb on + strand, within Dsui_2106 at 2229.698 kb on - strand, within Dsui_2106 at 2229.703 kb on + strand, within Dsui_2106 at 2229.711 kb on - strand, within Dsui_2106 at 2229.737 kb on - strand, within Dsui_2106 at 2229.739 kb on + strand, within Dsui_2106 at 2229.747 kb on - strand, within Dsui_2106 at 2229.747 kb on - strand, within Dsui_2106 at 2229.754 kb on + strand, within Dsui_2106 at 2229.759 kb on + strand, within Dsui_2106 at 2229.759 kb on + strand at 2229.762 kb on - strand, within Dsui_2106 at 2229.767 kb on - strand, within Dsui_2106 at 2229.767 kb on - strand, within Dsui_2106 at 2229.777 kb on - strand, within Dsui_2106 at 2229.784 kb on + strand, within Dsui_2106 at 2229.820 kb on + strand, within Dsui_2106 at 2229.822 kb on - strand at 2229.846 kb on - strand at 2229.846 kb on - strand at 2229.884 kb on + strand at 2229.884 kb on + strand at 2229.892 kb on - strand at 2229.894 kb on + strand at 2229.902 kb on - strand at 2229.922 kb on - strand at 2229.951 kb on - strand at 2229.970 kb on - strand at 2229.974 kb on + strand at 2229.974 kb on + strand at 2229.982 kb on - strand at 2229.982 kb on - strand at 2229.982 kb on - strand at 2230.000 kb on + strand at 2230.004 kb on - strand at 2230.018 kb on + strand at 2230.104 kb on + strand at 2230.126 kb on + strand at 2230.130 kb on - strand at 2230.130 kb on - strand at 2230.132 kb on + strand at 2230.134 kb on - strand at 2230.145 kb on - strand at 2230.149 kb on + strand at 2230.157 kb on - strand at 2230.219 kb on - strand at 2230.219 kb on - strand at 2230.219 kb on - strand at 2230.219 kb on - strand at 2230.242 kb on + strand at 2230.260 kb on - strand at 2230.300 kb on - strand at 2230.309 kb on - strand at 2230.314 kb on - strand at 2230.322 kb on - strand at 2230.349 kb on - strand at 2230.431 kb on - strand at 2230.433 kb on + strand at 2230.441 kb on - strand at 2230.441 kb on - strand at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.602 kb on - strand, within Dsui_2107 at 2230.621 kb on + strand at 2230.657 kb on - strand, within Dsui_2107 at 2230.706 kb on - strand, within Dsui_2107 at 2230.710 kb on - strand, within Dsui_2107 at 2230.766 kb on - strand, within Dsui_2107 at 2230.813 kb on - strand, within Dsui_2107 at 2230.875 kb on - strand, within Dsui_2107 at 2230.890 kb on - strand, within Dsui_2107 at 2230.913 kb on + strand, within Dsui_2107 at 2230.957 kb on - strand, within Dsui_2107 at 2230.989 kb on + strand, within Dsui_2107 at 2230.989 kb on + strand at 2230.997 kb on - strand, within Dsui_2107 at 2231.008 kb on + strand at 2231.132 kb on - strand, within Dsui_2107 at 2231.139 kb on - strand, within Dsui_2107 at 2231.163 kb on - strand, within Dsui_2107 at 2231.192 kb on - strand, within Dsui_2107 at 2231.238 kb on - strand, within Dsui_2107 at 2231.248 kb on - strand, within Dsui_2107 at 2231.268 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.310 kb on - strand, within Dsui_2107 at 2231.371 kb on - strand at 2231.381 kb on + strand at 2231.389 kb on - strand at 2231.389 kb on - strand at 2231.392 kb on + strand at 2231.476 kb on - strand at 2231.512 kb on - strand at 2231.589 kb on + strand at 2231.600 kb on + strand at 2231.661 kb on - strand at 2231.848 kb on + strand, within Dsui_2108 at 2231.865 kb on - strand, within Dsui_2108 at 2231.964 kb on - strand, within Dsui_2108 at 2232.011 kb on - strand, within Dsui_2108 at 2232.013 kb on + strand, within Dsui_2108 at 2232.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,229,467 + +1.1 2,229,467 + -1.3 2,229,467 + +0.1 2,229,467 + +0.1 2,229,527 + Dsui_2106 0.18 -1.5 2,229,556 - Dsui_2106 0.25 +2.1 2,229,569 - Dsui_2106 0.28 +1.1 2,229,587 + Dsui_2106 0.32 -0.5 2,229,587 + Dsui_2106 0.32 +1.1 2,229,595 - Dsui_2106 0.34 +1.1 2,229,595 - Dsui_2106 0.34 -3.0 2,229,595 - Dsui_2106 0.34 +1.1 2,229,595 - Dsui_2106 0.34 +1.1 2,229,595 - Dsui_2106 0.34 +1.1 2,229,600 + Dsui_2106 0.35 +0.1 2,229,613 - Dsui_2106 0.38 -0.5 2,229,644 + Dsui_2106 0.46 +1.1 2,229,698 - Dsui_2106 0.59 -2.1 2,229,703 + Dsui_2106 0.60 -0.5 2,229,711 - Dsui_2106 0.62 -0.5 2,229,737 - Dsui_2106 0.68 -1.5 2,229,739 + Dsui_2106 0.68 +1.1 2,229,747 - Dsui_2106 0.70 +0.1 2,229,747 - Dsui_2106 0.70 +1.1 2,229,754 + Dsui_2106 0.72 -1.3 2,229,759 + Dsui_2106 0.73 +1.1 2,229,759 + +1.1 2,229,762 - Dsui_2106 0.74 +1.1 2,229,767 - Dsui_2106 0.75 -0.9 2,229,767 - Dsui_2106 0.75 +0.1 2,229,777 - Dsui_2106 0.77 -0.5 2,229,784 + Dsui_2106 0.79 -0.5 2,229,820 + Dsui_2106 0.88 +1.1 2,229,822 - +1.1 2,229,846 - -1.8 2,229,846 - -1.3 2,229,884 + +0.1 2,229,884 + +0.1 2,229,892 - +1.1 2,229,894 + +0.1 2,229,902 - +1.1 2,229,922 - +0.1 2,229,951 - +0.1 2,229,970 - -1.9 2,229,974 + +1.1 2,229,974 + +1.1 2,229,982 - +1.1 2,229,982 - +1.1 2,229,982 - +1.1 2,230,000 + +0.1 2,230,004 - +0.1 2,230,018 + +1.1 2,230,104 + -1.8 2,230,126 + +0.1 2,230,130 - -1.8 2,230,130 - +0.1 2,230,132 + +1.1 2,230,134 - -0.5 2,230,145 - -1.9 2,230,149 + +1.1 2,230,157 - +0.1 2,230,219 - +0.3 2,230,219 - -1.3 2,230,219 - +0.1 2,230,219 - +1.2 2,230,242 + +1.1 2,230,260 - +0.1 2,230,300 - +0.8 2,230,309 - +0.8 2,230,314 - -0.5 2,230,322 - -0.9 2,230,349 - -0.9 2,230,431 - -1.3 2,230,433 + +1.0 2,230,441 - +1.0 2,230,441 - +1.0 2,230,460 - -1.5 2,230,460 - -1.7 2,230,460 - -0.6 2,230,460 - -0.1 2,230,460 - +1.0 2,230,602 - Dsui_2107 0.16 -0.5 2,230,621 + +1.0 2,230,657 - Dsui_2107 0.22 -2.1 2,230,706 - Dsui_2107 0.27 -0.6 2,230,710 - Dsui_2107 0.27 -1.5 2,230,766 - Dsui_2107 0.33 -0.5 2,230,813 - Dsui_2107 0.37 +1.0 2,230,875 - Dsui_2107 0.44 +0.0 2,230,890 - Dsui_2107 0.45 +1.0 2,230,913 + Dsui_2107 0.48 +1.0 2,230,957 - Dsui_2107 0.52 +1.0 2,230,989 + Dsui_2107 0.55 +1.0 2,230,989 + +1.0 2,230,997 - Dsui_2107 0.56 -1.0 2,231,008 + +0.0 2,231,132 - Dsui_2107 0.70 +1.0 2,231,139 - Dsui_2107 0.71 -0.5 2,231,163 - Dsui_2107 0.73 -0.5 2,231,192 - Dsui_2107 0.76 -1.5 2,231,238 - Dsui_2107 0.81 -1.5 2,231,248 - Dsui_2107 0.82 +0.0 2,231,268 - Dsui_2107 0.84 -1.3 2,231,297 - Dsui_2107 0.87 -1.5 2,231,297 - Dsui_2107 0.87 +0.0 2,231,297 - Dsui_2107 0.87 +1.0 2,231,297 - Dsui_2107 0.87 +1.0 2,231,297 - Dsui_2107 0.87 +0.0 2,231,310 - Dsui_2107 0.88 +1.0 2,231,371 - +0.0 2,231,381 + +1.0 2,231,389 - -1.0 2,231,389 - +0.0 2,231,392 + -0.5 2,231,476 - -1.3 2,231,512 - -1.0 2,231,589 + +1.0 2,231,600 + +1.0 2,231,661 - -0.5 2,231,848 + Dsui_2108 0.14 +0.1 2,231,865 - Dsui_2108 0.15 +0.0 2,231,964 - Dsui_2108 0.19 +0.0 2,232,011 - Dsui_2108 0.20 +1.0 2,232,013 + Dsui_2108 0.20 -0.8 2,232,127 - +1.0
Or see this region's nucleotide sequence