Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2100 and Dsui_2101 are separated by 4 nucleotides Dsui_2101 and Dsui_2102 are separated by 3 nucleotides Dsui_2102 and Dsui_2103 are separated by 132 nucleotides Dsui_2103 and Dsui_2104 are separated by 835 nucleotides
Dsui_2100: Dsui_2100 - hypothetical protein, at 2,224,757 to 2,225,161
_2100
Dsui_2101: Dsui_2101 - hypothetical protein, at 2,225,166 to 2,225,657
_2101
Dsui_2102: Dsui_2102 - hypothetical protein, at 2,225,661 to 2,225,909
_2102
Dsui_2103: Dsui_2103 - hypothetical protein, at 2,226,042 to 2,226,308
_2103
Dsui_2104: Dsui_2104 - DNA replication protein, at 2,227,144 to 2,227,878
_2104
Position (kb)
2226
2227 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2225.183 kb on + strand at 2225.238 kb on + strand, within Dsui_2101 at 2225.292 kb on - strand, within Dsui_2101 at 2225.295 kb on + strand, within Dsui_2101 at 2225.340 kb on + strand, within Dsui_2101 at 2225.343 kb on - strand, within Dsui_2101 at 2225.414 kb on + strand, within Dsui_2101 at 2225.430 kb on + strand, within Dsui_2101 at 2225.480 kb on + strand at 2225.585 kb on - strand, within Dsui_2101 at 2225.617 kb on - strand at 2225.691 kb on - strand, within Dsui_2102 at 2225.715 kb on + strand at 2225.715 kb on + strand, within Dsui_2102 at 2225.715 kb on + strand at 2225.715 kb on + strand at 2225.718 kb on - strand, within Dsui_2102 at 2225.723 kb on - strand, within Dsui_2102 at 2225.723 kb on - strand at 2225.723 kb on - strand at 2225.723 kb on - strand, within Dsui_2102 at 2225.723 kb on - strand, within Dsui_2102 at 2225.723 kb on - strand, within Dsui_2102 at 2225.723 kb on - strand at 2225.840 kb on - strand, within Dsui_2102 at 2225.873 kb on - strand, within Dsui_2102 at 2225.919 kb on + strand at 2226.024 kb on + strand at 2226.025 kb on + strand at 2226.067 kb on - strand at 2226.067 kb on - strand at 2226.095 kb on + strand, within Dsui_2103 at 2226.242 kb on + strand, within Dsui_2103 at 2226.247 kb on + strand, within Dsui_2103 at 2226.250 kb on - strand, within Dsui_2103 at 2226.255 kb on - strand at 2226.255 kb on - strand, within Dsui_2103 at 2226.255 kb on - strand at 2226.263 kb on + strand, within Dsui_2103 at 2226.303 kb on - strand at 2226.407 kb on + strand at 2226.439 kb on + strand at 2226.490 kb on - strand at 2226.528 kb on + strand at 2226.536 kb on - strand at 2226.665 kb on + strand at 2226.665 kb on - strand at 2226.701 kb on - strand at 2226.710 kb on + strand at 2226.718 kb on - strand at 2226.766 kb on + strand at 2226.771 kb on + strand at 2226.771 kb on + strand at 2226.771 kb on + strand at 2226.771 kb on + strand at 2226.779 kb on - strand at 2226.779 kb on - strand at 2226.833 kb on + strand at 2226.840 kb on - strand at 2226.841 kb on - strand at 2226.888 kb on - strand at 2226.900 kb on + strand at 2226.946 kb on - strand at 2227.001 kb on + strand at 2227.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,225,183 + -1.5 2,225,238 + Dsui_2101 0.15 +0.1 2,225,292 - Dsui_2101 0.26 -0.5 2,225,295 + Dsui_2101 0.26 +1.1 2,225,340 + Dsui_2101 0.35 +1.1 2,225,343 - Dsui_2101 0.36 +1.1 2,225,414 + Dsui_2101 0.50 -0.5 2,225,430 + Dsui_2101 0.54 -0.5 2,225,480 + +1.1 2,225,585 - Dsui_2101 0.85 -2.3 2,225,617 - +1.1 2,225,691 - Dsui_2102 0.12 +1.1 2,225,715 + +0.1 2,225,715 + Dsui_2102 0.22 +1.1 2,225,715 + +1.1 2,225,715 + +0.1 2,225,718 - Dsui_2102 0.23 +1.1 2,225,723 - Dsui_2102 0.25 -0.5 2,225,723 - +1.1 2,225,723 - +1.1 2,225,723 - Dsui_2102 0.25 +1.1 2,225,723 - Dsui_2102 0.25 +0.1 2,225,723 - Dsui_2102 0.25 -0.5 2,225,723 - +1.1 2,225,840 - Dsui_2102 0.72 -1.3 2,225,873 - Dsui_2102 0.85 -1.3 2,225,919 + -0.5 2,226,024 + +0.0 2,226,025 + +0.4 2,226,067 - +1.1 2,226,067 - +1.1 2,226,095 + Dsui_2103 0.20 +0.5 2,226,242 + Dsui_2103 0.75 +0.1 2,226,247 + Dsui_2103 0.77 +0.4 2,226,250 - Dsui_2103 0.78 +1.1 2,226,255 - +1.1 2,226,255 - Dsui_2103 0.80 +1.1 2,226,255 - +1.1 2,226,263 + Dsui_2103 0.83 +0.1 2,226,303 - +0.1 2,226,407 + -3.2 2,226,439 + -2.8 2,226,490 - +1.1 2,226,528 + -0.5 2,226,536 - -1.5 2,226,665 + -0.5 2,226,665 - -0.5 2,226,701 - +1.1 2,226,710 + +1.1 2,226,718 - +0.1 2,226,766 + +1.1 2,226,771 + +1.1 2,226,771 + -1.5 2,226,771 + -2.2 2,226,771 + +1.1 2,226,779 - +1.1 2,226,779 - +1.1 2,226,833 + +0.1 2,226,840 - -0.5 2,226,841 - +1.1 2,226,888 - +1.1 2,226,900 + +1.1 2,226,946 - -0.5 2,227,001 + +0.1 2,227,083 + +1.1
Or see this region's nucleotide sequence