Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2096 and Dsui_2097 are separated by 131 nucleotides Dsui_2097 and Dsui_2098 are separated by 77 nucleotides Dsui_2098 and Dsui_2099 are separated by 13 nucleotides
Dsui_2096: Dsui_2096 - methyl-accepting chemotaxis protein, at 2,220,459 to 2,222,066
_2096
Dsui_2097: Dsui_2097 - putative phosphohydrolase, at 2,222,198 to 2,223,391
_2097
Dsui_2098: Dsui_2098 - hypothetical protein, at 2,223,469 to 2,223,855
_2098
Dsui_2099: Dsui_2099 - RNA polymerase sigma factor, sigma-70 family, at 2,223,869 to 2,224,462
_2099
Position (kb)
2222
2223
2224 Strain fitness (log2 ratio)
-2
-1
0
1 at 2221.247 kb on + strand, within Dsui_2096 at 2221.247 kb on + strand, within Dsui_2096 at 2221.254 kb on - strand, within Dsui_2096 at 2221.255 kb on - strand, within Dsui_2096 at 2221.322 kb on + strand, within Dsui_2096 at 2221.351 kb on + strand, within Dsui_2096 at 2221.701 kb on + strand, within Dsui_2096 at 2221.818 kb on + strand, within Dsui_2096 at 2222.257 kb on + strand at 2222.282 kb on + strand at 2222.366 kb on - strand, within Dsui_2097 at 2222.371 kb on - strand, within Dsui_2097 at 2222.443 kb on - strand, within Dsui_2097 at 2222.504 kb on + strand, within Dsui_2097 at 2222.629 kb on + strand at 2222.634 kb on + strand, within Dsui_2097 at 2222.642 kb on - strand at 2222.710 kb on - strand, within Dsui_2097 at 2222.928 kb on + strand at 2222.935 kb on - strand, within Dsui_2097 at 2223.325 kb on + strand at 2223.497 kb on + strand at 2223.497 kb on + strand at 2223.671 kb on - strand, within Dsui_2098 at 2223.872 kb on + strand at 2223.875 kb on - strand at 2223.880 kb on - strand at 2223.880 kb on - strand at 2223.977 kb on - strand at 2223.979 kb on + strand at 2223.987 kb on - strand at 2223.987 kb on - strand at 2224.169 kb on + strand, within Dsui_2099 at 2224.178 kb on - strand at 2224.178 kb on - strand, within Dsui_2099 at 2224.269 kb on + strand at 2224.311 kb on - strand at 2224.353 kb on - strand, within Dsui_2099
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,221,247 + Dsui_2096 0.49 -1.5 2,221,247 + Dsui_2096 0.49 -2.0 2,221,254 - Dsui_2096 0.49 +1.0 2,221,255 - Dsui_2096 0.50 -1.3 2,221,322 + Dsui_2096 0.54 -1.3 2,221,351 + Dsui_2096 0.55 -1.3 2,221,701 + Dsui_2096 0.77 +1.0 2,221,818 + Dsui_2096 0.85 -1.0 2,222,257 + +1.0 2,222,282 + -0.5 2,222,366 - Dsui_2097 0.14 -0.5 2,222,371 - Dsui_2097 0.14 +1.0 2,222,443 - Dsui_2097 0.21 +1.0 2,222,504 + Dsui_2097 0.26 +0.0 2,222,629 + +1.0 2,222,634 + Dsui_2097 0.37 -1.0 2,222,642 - +0.0 2,222,710 - Dsui_2097 0.43 -0.5 2,222,928 + +1.0 2,222,935 - Dsui_2097 0.62 +1.0 2,223,325 + -1.3 2,223,497 + -0.5 2,223,497 + +0.1 2,223,671 - Dsui_2098 0.52 -0.0 2,223,872 + +1.1 2,223,875 - -0.5 2,223,880 - +1.1 2,223,880 - -0.9 2,223,977 - +1.1 2,223,979 + +1.1 2,223,987 - +1.1 2,223,987 - -0.9 2,224,169 + Dsui_2099 0.51 +1.1 2,224,178 - +1.1 2,224,178 - Dsui_2099 0.52 -0.9 2,224,269 + +1.1 2,224,311 - -0.5 2,224,353 - Dsui_2099 0.81 +0.1
Or see this region's nucleotide sequence