Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2059 and Dsui_2060 overlap by 1 nucleotides Dsui_2060 and Dsui_2061 are separated by 87 nucleotides Dsui_2061 and Dsui_2062 are separated by 504 nucleotides
Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996
_2059
Dsui_2060: Dsui_2060 - branched-chain amino acid ABC-type transport system, permease component, at 2,178,996 to 2,179,877
_2060
Dsui_2061: Dsui_2061 - ABC-type branched-chain amino acid transport system, periplasmic component, at 2,179,965 to 2,181,119
_2061
Dsui_2062: Dsui_2062 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 2,181,624 to 2,182,031
_2062
Position (kb)
2179
2180
2181
2182 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2179.198 kb on + strand, within Dsui_2060 at 2179.410 kb on - strand, within Dsui_2060 at 2179.723 kb on + strand, within Dsui_2060 at 2179.774 kb on + strand, within Dsui_2060 at 2179.960 kb on + strand at 2179.996 kb on + strand at 2180.115 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.296 kb on - strand, within Dsui_2061 at 2180.326 kb on + strand, within Dsui_2061 at 2180.362 kb on - strand, within Dsui_2061 at 2180.405 kb on + strand, within Dsui_2061 at 2180.415 kb on - strand, within Dsui_2061 at 2180.447 kb on + strand at 2180.457 kb on + strand, within Dsui_2061 at 2180.479 kb on + strand, within Dsui_2061 at 2180.487 kb on - strand, within Dsui_2061 at 2180.498 kb on - strand, within Dsui_2061 at 2180.819 kb on + strand, within Dsui_2061 at 2180.827 kb on - strand, within Dsui_2061 at 2180.827 kb on - strand, within Dsui_2061 at 2181.239 kb on + strand at 2181.247 kb on - strand at 2181.271 kb on + strand at 2181.281 kb on + strand at 2181.303 kb on + strand at 2181.479 kb on + strand at 2181.479 kb on + strand at 2181.487 kb on - strand at 2181.501 kb on - strand at 2181.569 kb on - strand at 2181.709 kb on + strand, within Dsui_2062 at 2181.709 kb on + strand, within Dsui_2062 at 2181.782 kb on - strand, within Dsui_2062 at 2181.785 kb on + strand, within Dsui_2062 at 2181.826 kb on + strand, within Dsui_2062 at 2181.850 kb on + strand, within Dsui_2062 at 2181.875 kb on + strand, within Dsui_2062 at 2181.921 kb on + strand, within Dsui_2062 at 2181.921 kb on + strand, within Dsui_2062 at 2181.983 kb on - strand, within Dsui_2062 at 2182.011 kb on - strand at 2182.013 kb on + strand at 2182.021 kb on - strand at 2182.021 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,179,198 + Dsui_2060 0.23 +1.1 2,179,410 - Dsui_2060 0.47 +0.0 2,179,723 + Dsui_2060 0.82 +0.1 2,179,774 + Dsui_2060 0.88 +1.1 2,179,960 + +1.1 2,179,996 + -1.8 2,180,115 - Dsui_2061 0.13 +0.4 2,180,244 - Dsui_2061 0.24 +0.2 2,180,244 - Dsui_2061 0.24 +0.4 2,180,244 - Dsui_2061 0.24 +0.1 2,180,296 - Dsui_2061 0.29 +0.4 2,180,326 + Dsui_2061 0.31 +1.1 2,180,362 - Dsui_2061 0.34 +0.2 2,180,405 + Dsui_2061 0.38 +1.1 2,180,415 - Dsui_2061 0.39 -0.1 2,180,447 + -0.5 2,180,457 + Dsui_2061 0.43 +1.1 2,180,479 + Dsui_2061 0.45 -0.9 2,180,487 - Dsui_2061 0.45 +0.3 2,180,498 - Dsui_2061 0.46 +0.4 2,180,819 + Dsui_2061 0.74 +0.1 2,180,827 - Dsui_2061 0.75 +0.0 2,180,827 - Dsui_2061 0.75 -0.2 2,181,239 + +1.0 2,181,247 - +0.3 2,181,271 + +0.0 2,181,281 + +0.0 2,181,303 + +1.0 2,181,479 + +1.0 2,181,479 + +1.0 2,181,487 - +0.0 2,181,501 - +1.0 2,181,569 - -0.5 2,181,709 + Dsui_2062 0.21 +2.0 2,181,709 + Dsui_2062 0.21 -1.4 2,181,782 - Dsui_2062 0.39 +0.0 2,181,785 + Dsui_2062 0.39 +2.0 2,181,826 + Dsui_2062 0.50 +1.6 2,181,850 + Dsui_2062 0.55 +0.3 2,181,875 + Dsui_2062 0.62 +1.0 2,181,921 + Dsui_2062 0.73 -1.0 2,181,921 + Dsui_2062 0.73 -0.4 2,181,983 - Dsui_2062 0.88 -0.5 2,182,011 - +0.0 2,182,013 + -0.6 2,182,021 - +0.0 2,182,021 - +1.0
Or see this region's nucleotide sequence