Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1993 and Dsui_1994 are separated by 19 nucleotides Dsui_1994 and Dsui_1995 are separated by 186 nucleotides Dsui_1995 and Dsui_1996 are separated by 67 nucleotides
Dsui_1993: Dsui_1993 - replicative DNA helicase, at 2,100,215 to 2,101,696
_1993
Dsui_1994: Dsui_1994 - NADPH-dependent FMN reductase, at 2,101,716 to 2,102,207
_1994
Dsui_1995: Dsui_1995 - transglutaminase-like enzyme, predicted cysteine protease, at 2,102,394 to 2,103,605
_1995
Dsui_1996: Dsui_1996 - PhoH family protein, at 2,103,673 to 2,105,115
_1996
Position (kb)
2102
2103
2104 Strain fitness (log2 ratio)
-2
-1
0
1 at 2101.750 kb on - strand at 2101.845 kb on - strand, within Dsui_1994 at 2101.864 kb on - strand at 2101.950 kb on + strand, within Dsui_1994 at 2102.163 kb on - strand at 2102.261 kb on - strand at 2102.923 kb on + strand at 2102.935 kb on - strand, within Dsui_1995 at 2102.942 kb on - strand, within Dsui_1995 at 2102.945 kb on + strand, within Dsui_1995 at 2102.965 kb on + strand, within Dsui_1995 at 2103.091 kb on + strand at 2103.178 kb on - strand, within Dsui_1995 at 2103.180 kb on + strand at 2103.257 kb on - strand, within Dsui_1995 at 2103.313 kb on - strand, within Dsui_1995 at 2103.345 kb on + strand, within Dsui_1995 at 2103.468 kb on - strand, within Dsui_1995 at 2103.502 kb on - strand at 2103.506 kb on + strand at 2103.638 kb on + strand at 2103.645 kb on + strand at 2103.696 kb on - strand at 2103.753 kb on - strand at 2103.776 kb on - strand at 2103.788 kb on - strand at 2103.788 kb on - strand at 2103.788 kb on - strand at 2103.805 kb on - strand at 2103.921 kb on + strand, within Dsui_1996 at 2103.998 kb on - strand, within Dsui_1996 at 2104.145 kb on - strand, within Dsui_1996 at 2104.155 kb on - strand, within Dsui_1996 at 2104.224 kb on - strand, within Dsui_1996 at 2104.226 kb on + strand, within Dsui_1996 at 2104.236 kb on + strand, within Dsui_1996 at 2104.341 kb on + strand, within Dsui_1996 at 2104.349 kb on - strand, within Dsui_1996 at 2104.395 kb on + strand, within Dsui_1996 at 2104.407 kb on - strand, within Dsui_1996 at 2104.446 kb on + strand at 2104.514 kb on - strand, within Dsui_1996 at 2104.516 kb on - strand, within Dsui_1996 at 2104.562 kb on + strand, within Dsui_1996 at 2104.562 kb on + strand at 2104.562 kb on + strand at 2104.562 kb on + strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,101,750 - -0.9 2,101,845 - Dsui_1994 0.26 -2.4 2,101,864 - +1.1 2,101,950 + Dsui_1994 0.48 +0.3 2,102,163 - +1.1 2,102,261 - -1.3 2,102,923 + +1.1 2,102,935 - Dsui_1995 0.45 +0.3 2,102,942 - Dsui_1995 0.45 +0.2 2,102,945 + Dsui_1995 0.45 +0.1 2,102,965 + Dsui_1995 0.47 -1.5 2,103,091 + +0.1 2,103,178 - Dsui_1995 0.65 +0.2 2,103,180 + +0.1 2,103,257 - Dsui_1995 0.71 +0.2 2,103,313 - Dsui_1995 0.76 -0.0 2,103,345 + Dsui_1995 0.78 -0.9 2,103,468 - Dsui_1995 0.89 -0.0 2,103,502 - +0.2 2,103,506 + +1.1 2,103,638 + -0.5 2,103,645 + -0.5 2,103,696 - -0.2 2,103,753 - -0.9 2,103,776 - +0.2 2,103,788 - +0.0 2,103,788 - -0.1 2,103,788 - +0.4 2,103,805 - -2.3 2,103,921 + Dsui_1996 0.17 +0.1 2,103,998 - Dsui_1996 0.23 -1.4 2,104,145 - Dsui_1996 0.33 -0.4 2,104,155 - Dsui_1996 0.33 +0.6 2,104,224 - Dsui_1996 0.38 -0.2 2,104,226 + Dsui_1996 0.38 -1.2 2,104,236 + Dsui_1996 0.39 -1.9 2,104,341 + Dsui_1996 0.46 -0.9 2,104,349 - Dsui_1996 0.47 -0.9 2,104,395 + Dsui_1996 0.50 -0.5 2,104,407 - Dsui_1996 0.51 +0.4 2,104,446 + -0.5 2,104,514 - Dsui_1996 0.58 +0.4 2,104,516 - Dsui_1996 0.58 +0.4 2,104,562 + Dsui_1996 0.62 +1.1 2,104,562 + +1.1 2,104,562 + +1.1 2,104,562 + Dsui_1996 0.62 -0.5 2,104,570 - Dsui_1996 0.62 -0.6 2,104,570 - Dsui_1996 0.62 -0.2 2,104,570 - Dsui_1996 0.62 +0.1
Or see this region's nucleotide sequence