Strain Fitness in Dechlorosoma suillum PS around Dsui_1992

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1989 and Dsui_1990 are separated by 73 nucleotidesDsui_1990 and Dsui_1991 overlap by 35 nucleotidesDsui_1991 and Dsui_1992 are separated by 15 nucleotidesDsui_1992 and Dsui_1993 are separated by 94 nucleotides Dsui_1989: Dsui_1989 - ribosomal protein S6, at 2,098,664 to 2,099,047 _1989 Dsui_1990: Dsui_1990 - primosomal replication protein N, at 2,099,121 to 2,099,411 _1990 Dsui_1991: Dsui_1991 - ribosomal protein S18, at 2,099,377 to 2,099,655 _1991 Dsui_1992: Dsui_1992 - ribosomal protein L9, at 2,099,671 to 2,100,120 _1992 Dsui_1993: Dsui_1993 - replicative DNA helicase, at 2,100,215 to 2,101,696 _1993 Position (kb) 2099 2100 2101Strain fitness (log2 ratio) -3 -2 -1 0 1at 2099.769 kb on + strand, within Dsui_1992at 2099.891 kb on + strand, within Dsui_1992at 2100.163 kb on + strandat 2100.218 kb on - strandat 2100.228 kb on + strandat 2100.228 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
remove
2,099,769 + Dsui_1992 0.22 -1.6
2,099,891 + Dsui_1992 0.49 -2.5
2,100,163 + +0.3
2,100,218 - -2.9
2,100,228 + +0.1
2,100,228 + +0.2

Or see this region's nucleotide sequence