Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1973 and Dsui_1974 overlap by 4 nucleotides Dsui_1974 and Dsui_1975 are separated by 11 nucleotides Dsui_1975 and Dsui_1976 are separated by 152 nucleotides
Dsui_1973: Dsui_1973 - transglutaminase-like enzyme, predicted cysteine protease, at 2,080,859 to 2,082,865
_1973
Dsui_1974: Dsui_1974 - hypothetical protein, at 2,082,862 to 2,083,836
_1974
Dsui_1975: Dsui_1975 - MoxR-like ATPase, at 2,083,848 to 2,084,789
_1975
Dsui_1976: Dsui_1976 - deacetylase, histone deacetylase/acetoin utilization protein, at 2,084,942 to 2,085,868
_1976
Position (kb)
2083
2084
2085 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2082.875 kb on - strand at 2082.948 kb on + strand at 2082.991 kb on - strand at 2083.130 kb on - strand, within Dsui_1974 at 2083.276 kb on - strand, within Dsui_1974 at 2083.281 kb on + strand at 2083.413 kb on + strand at 2083.507 kb on - strand, within Dsui_1974 at 2083.513 kb on - strand at 2083.521 kb on + strand, within Dsui_1974 at 2083.529 kb on - strand, within Dsui_1974 at 2083.557 kb on - strand, within Dsui_1974 at 2083.654 kb on + strand at 2083.659 kb on + strand at 2083.662 kb on - strand, within Dsui_1974 at 2083.679 kb on + strand at 2083.701 kb on + strand at 2083.709 kb on + strand at 2083.709 kb on + strand at 2083.717 kb on - strand, within Dsui_1974 at 2083.717 kb on - strand, within Dsui_1974 at 2083.739 kb on + strand at 2083.819 kb on - strand at 2083.854 kb on - strand at 2083.859 kb on - strand at 2083.859 kb on - strand at 2083.894 kb on - strand at 2083.962 kb on - strand, within Dsui_1975 at 2083.971 kb on - strand at 2084.007 kb on - strand, within Dsui_1975 at 2084.032 kb on - strand, within Dsui_1975 at 2084.042 kb on + strand, within Dsui_1975 at 2084.104 kb on - strand, within Dsui_1975 at 2084.159 kb on + strand, within Dsui_1975 at 2084.225 kb on + strand, within Dsui_1975 at 2084.253 kb on + strand, within Dsui_1975 at 2084.293 kb on - strand, within Dsui_1975 at 2084.293 kb on - strand at 2084.300 kb on + strand, within Dsui_1975 at 2084.335 kb on - strand, within Dsui_1975 at 2084.407 kb on + strand, within Dsui_1975 at 2084.415 kb on - strand, within Dsui_1975 at 2084.475 kb on - strand at 2084.476 kb on - strand, within Dsui_1975 at 2084.485 kb on - strand, within Dsui_1975 at 2084.562 kb on + strand, within Dsui_1975 at 2084.608 kb on - strand, within Dsui_1975 at 2084.613 kb on + strand, within Dsui_1975 at 2084.687 kb on - strand, within Dsui_1975 at 2084.687 kb on - strand, within Dsui_1975 at 2084.692 kb on - strand, within Dsui_1975 at 2084.785 kb on + strand at 2084.792 kb on - strand at 2084.836 kb on + strand at 2084.864 kb on + strand at 2084.887 kb on + strand at 2084.887 kb on - strand at 2084.900 kb on - strand at 2085.048 kb on + strand, within Dsui_1976 at 2085.099 kb on + strand, within Dsui_1976 at 2085.099 kb on + strand, within Dsui_1976 at 2085.099 kb on + strand, within Dsui_1976 at 2085.135 kb on + strand, within Dsui_1976 at 2085.143 kb on - strand at 2085.221 kb on - strand at 2085.262 kb on - strand at 2085.344 kb on + strand, within Dsui_1976 at 2085.344 kb on + strand, within Dsui_1976 at 2085.474 kb on + strand, within Dsui_1976 at 2085.485 kb on + strand, within Dsui_1976 at 2085.495 kb on + strand, within Dsui_1976 at 2085.542 kb on + strand, within Dsui_1976 at 2085.637 kb on + strand, within Dsui_1976 at 2085.645 kb on - strand, within Dsui_1976 at 2085.692 kb on + strand, within Dsui_1976 at 2085.702 kb on + strand, within Dsui_1976 at 2085.774 kb on - strand, within Dsui_1976
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,082,875 - +1.2 2,082,948 + +0.2 2,082,991 - +1.2 2,083,130 - Dsui_1974 0.27 -1.2 2,083,276 - Dsui_1974 0.42 +0.2 2,083,281 + +1.2 2,083,413 + +0.2 2,083,507 - Dsui_1974 0.66 -1.2 2,083,513 - +1.2 2,083,521 + Dsui_1974 0.68 +1.2 2,083,529 - Dsui_1974 0.68 +0.2 2,083,557 - Dsui_1974 0.71 +0.2 2,083,654 + +1.2 2,083,659 + +0.2 2,083,662 - Dsui_1974 0.82 -0.4 2,083,679 + +1.2 2,083,701 + -1.4 2,083,709 + +1.2 2,083,709 + +1.2 2,083,717 - Dsui_1974 0.88 -1.6 2,083,717 - Dsui_1974 0.88 -1.2 2,083,739 + +1.2 2,083,819 - -0.4 2,083,854 - +0.2 2,083,859 - +2.8 2,083,859 - -0.8 2,083,894 - -0.8 2,083,962 - Dsui_1975 0.12 -0.4 2,083,971 - +1.2 2,084,007 - Dsui_1975 0.17 +0.6 2,084,032 - Dsui_1975 0.20 +0.2 2,084,042 + Dsui_1975 0.21 -0.8 2,084,104 - Dsui_1975 0.27 +1.2 2,084,159 + Dsui_1975 0.33 -2.2 2,084,225 + Dsui_1975 0.40 -0.4 2,084,253 + Dsui_1975 0.43 +1.2 2,084,293 - Dsui_1975 0.47 -0.2 2,084,293 - +1.2 2,084,300 + Dsui_1975 0.48 -0.4 2,084,335 - Dsui_1975 0.52 +3.2 2,084,407 + Dsui_1975 0.59 +1.2 2,084,415 - Dsui_1975 0.60 -0.4 2,084,475 - +1.2 2,084,476 - Dsui_1975 0.67 -0.4 2,084,485 - Dsui_1975 0.68 +1.2 2,084,562 + Dsui_1975 0.76 -0.8 2,084,608 - Dsui_1975 0.81 -2.1 2,084,613 + Dsui_1975 0.81 +1.2 2,084,687 - Dsui_1975 0.89 -1.8 2,084,687 - Dsui_1975 0.89 -1.1 2,084,692 - Dsui_1975 0.90 -0.4 2,084,785 + +0.2 2,084,792 - +1.2 2,084,836 + +0.0 2,084,864 + +0.2 2,084,887 + -0.6 2,084,887 - +0.2 2,084,900 - +1.2 2,085,048 + Dsui_1976 0.11 +0.3 2,085,099 + Dsui_1976 0.17 +0.4 2,085,099 + Dsui_1976 0.17 +0.6 2,085,099 + Dsui_1976 0.17 +0.5 2,085,135 + Dsui_1976 0.21 +0.4 2,085,143 - +1.2 2,085,221 - +1.2 2,085,262 - -0.4 2,085,344 + Dsui_1976 0.43 -0.1 2,085,344 + Dsui_1976 0.43 +0.2 2,085,474 + Dsui_1976 0.57 +0.5 2,085,485 + Dsui_1976 0.59 +0.1 2,085,495 + Dsui_1976 0.60 +0.8 2,085,542 + Dsui_1976 0.65 +0.6 2,085,637 + Dsui_1976 0.75 +0.1 2,085,645 - Dsui_1976 0.76 -2.0 2,085,692 + Dsui_1976 0.81 +0.7 2,085,702 + Dsui_1976 0.82 +0.3 2,085,774 - Dsui_1976 0.90 +1.2
Or see this region's nucleotide sequence