Strain Fitness in Dechlorosoma suillum PS around Dsui_1931

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1930 and Dsui_1931 overlap by 8 nucleotidesDsui_1931 and Dsui_1932 are separated by 166 nucleotides Dsui_1930: Dsui_1930 - transcriptional regulator, at 2,040,294 to 2,041,322 _1930 Dsui_1931: Dsui_1931 - transcriptional regulator, at 2,041,315 to 2,041,821 _1931 Dsui_1932: Dsui_1932 - transcriptional regulator, at 2,041,988 to 2,042,491 _1932 Position (kb) 2041 2042Strain fitness (log2 ratio) -2 -1 0 1at 2040.323 kb on + strandat 2040.348 kb on + strandat 2040.438 kb on - strand, within Dsui_1930at 2040.527 kb on + strand, within Dsui_1930at 2040.565 kb on + strand, within Dsui_1930at 2040.570 kb on + strand, within Dsui_1930at 2040.595 kb on + strand, within Dsui_1930at 2040.601 kb on - strand, within Dsui_1930at 2040.793 kb on + strand, within Dsui_1930at 2040.803 kb on + strand, within Dsui_1930at 2040.816 kb on - strandat 2040.905 kb on - strandat 2040.905 kb on - strandat 2040.936 kb on + strand, within Dsui_1930at 2040.986 kb on + strand, within Dsui_1930at 2040.994 kb on - strand, within Dsui_1930at 2041.018 kb on - strand, within Dsui_1930at 2041.042 kb on - strand, within Dsui_1930at 2041.253 kb on - strandat 2041.278 kb on + strandat 2041.297 kb on + strandat 2041.317 kb on + strandat 2041.527 kb on + strand, within Dsui_1931at 2041.553 kb on - strandat 2041.579 kb on - strandat 2041.637 kb on - strandat 2041.651 kb on + strand, within Dsui_1931at 2041.659 kb on - strand, within Dsui_1931at 2041.663 kb on + strand, within Dsui_1931at 2041.765 kb on + strand, within Dsui_1931at 2041.773 kb on - strandat 2041.773 kb on - strandat 2041.786 kb on + strandat 2041.796 kb on - strandat 2041.825 kb on - strandat 2041.831 kb on - strandat 2041.914 kb on - strandat 2041.919 kb on - strandat 2041.958 kb on - strandat 2042.187 kb on - strand, within Dsui_1932at 2042.214 kb on + strand, within Dsui_1932at 2042.214 kb on + strand, within Dsui_1932at 2042.406 kb on - strand, within Dsui_1932at 2042.406 kb on - strand, within Dsui_1932at 2042.406 kb on - strand, within Dsui_1932at 2042.502 kb on - strandat 2042.512 kb on - strandat 2042.545 kb on - strandat 2042.570 kb on + strandat 2042.570 kb on + strandat 2042.578 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
remove
2,040,323 + -0.5
2,040,348 + +0.2
2,040,438 - Dsui_1930 0.14 +1.2
2,040,527 + Dsui_1930 0.23 -0.4
2,040,565 + Dsui_1930 0.26 +0.2
2,040,570 + Dsui_1930 0.27 +0.2
2,040,595 + Dsui_1930 0.29 -1.1
2,040,601 - Dsui_1930 0.30 -0.4
2,040,793 + Dsui_1930 0.48 -1.8
2,040,803 + Dsui_1930 0.49 +0.2
2,040,816 - +1.2
2,040,905 - +1.2
2,040,905 - +0.2
2,040,936 + Dsui_1930 0.62 +0.2
2,040,986 + Dsui_1930 0.67 +0.2
2,040,994 - Dsui_1930 0.68 +1.2
2,041,018 - Dsui_1930 0.70 +0.2
2,041,042 - Dsui_1930 0.73 -0.8
2,041,253 - +1.2
2,041,278 + +0.7
2,041,297 + +1.2
2,041,317 + +0.2
2,041,527 + Dsui_1931 0.42 +0.7
2,041,553 - +1.2
2,041,579 - +1.2
2,041,637 - +1.2
2,041,651 + Dsui_1931 0.66 +1.2
2,041,659 - Dsui_1931 0.68 -0.9
2,041,663 + Dsui_1931 0.69 -1.1
2,041,765 + Dsui_1931 0.89 -1.6
2,041,773 - +1.2
2,041,773 - +0.2
2,041,786 + -1.9
2,041,796 - +0.2
2,041,825 - +0.2
2,041,831 - +1.2
2,041,914 - +1.2
2,041,919 - +1.2
2,041,958 - +1.2
2,042,187 - Dsui_1932 0.39 +1.2
2,042,214 + Dsui_1932 0.45 +0.2
2,042,214 + Dsui_1932 0.45 -2.2
2,042,406 - Dsui_1932 0.83 -1.9
2,042,406 - Dsui_1932 0.83 -0.3
2,042,406 - Dsui_1932 0.83 +1.2
2,042,502 - +0.2
2,042,512 - +0.4
2,042,545 - +0.6
2,042,570 + +1.2
2,042,570 + +0.2
2,042,578 - +0.5

Or see this region's nucleotide sequence