Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1879 and Dsui_1880 are separated by 206 nucleotides Dsui_1880 and Dsui_1881 are separated by 233 nucleotides Dsui_1881 and Dsui_1882 are separated by 62 nucleotides Dsui_1882 and Dsui_1883 are separated by 103 nucleotides
Dsui_1879: Dsui_1879 - luciferase family oxidoreductase, group 1, at 1,976,525 to 1,977,526
_1879
Dsui_1880: Dsui_1880 - tRNA-Arg, at 1,977,733 to 1,977,807
_1880
Dsui_1881: Dsui_1881 - methyl-accepting chemotaxis protein, at 1,978,041 to 1,980,077
_1881
Dsui_1882: Dsui_1882 - hypothetical protein, at 1,980,140 to 1,980,637
_1882
Dsui_1883: Dsui_1883 - ATPase component of ABC transporters with duplicated ATPase domain, at 1,980,741 to 1,982,663
_1883
Position (kb)
1978
1979
1980
1981 Strain fitness (log2 ratio)
-2
-1
0
1 at 1977.142 kb on - strand at 1977.162 kb on + strand, within Dsui_1879 at 1977.200 kb on + strand, within Dsui_1879 at 1977.262 kb on + strand, within Dsui_1879 at 1977.328 kb on + strand at 1977.329 kb on + strand, within Dsui_1879 at 1977.492 kb on + strand at 1977.519 kb on - strand at 1977.522 kb on + strand at 1977.622 kb on - strand at 1977.862 kb on + strand at 1977.862 kb on + strand at 1977.984 kb on + strand at 1977.989 kb on + strand at 1977.989 kb on + strand at 1977.992 kb on - strand at 1977.997 kb on - strand at 1978.003 kb on + strand at 1978.008 kb on - strand at 1978.064 kb on + strand at 1978.099 kb on + strand at 1978.149 kb on - strand at 1978.177 kb on + strand at 1978.196 kb on + strand at 1978.215 kb on + strand at 1978.247 kb on - strand at 1978.292 kb on - strand at 1978.311 kb on + strand, within Dsui_1881 at 1978.317 kb on + strand, within Dsui_1881 at 1978.365 kb on - strand, within Dsui_1881 at 1978.542 kb on + strand, within Dsui_1881 at 1978.592 kb on - strand, within Dsui_1881 at 1978.608 kb on + strand, within Dsui_1881 at 1978.608 kb on + strand, within Dsui_1881 at 1978.631 kb on + strand, within Dsui_1881 at 1978.692 kb on - strand, within Dsui_1881 at 1978.703 kb on + strand, within Dsui_1881 at 1978.712 kb on + strand, within Dsui_1881 at 1978.720 kb on - strand, within Dsui_1881 at 1978.723 kb on + strand, within Dsui_1881 at 1979.084 kb on + strand, within Dsui_1881 at 1979.090 kb on + strand, within Dsui_1881 at 1979.098 kb on - strand, within Dsui_1881 at 1979.131 kb on - strand at 1979.196 kb on + strand, within Dsui_1881 at 1979.211 kb on - strand, within Dsui_1881 at 1979.211 kb on - strand, within Dsui_1881 at 1979.539 kb on + strand, within Dsui_1881 at 1979.782 kb on + strand, within Dsui_1881 at 1979.790 kb on - strand, within Dsui_1881 at 1979.897 kb on - strand at 1979.911 kb on + strand at 1979.919 kb on - strand at 1979.984 kb on - strand at 1980.000 kb on - strand at 1980.032 kb on - strand at 1980.062 kb on - strand at 1980.174 kb on - strand at 1980.268 kb on + strand, within Dsui_1882 at 1980.302 kb on + strand, within Dsui_1882 at 1980.305 kb on - strand, within Dsui_1882 at 1980.404 kb on - strand, within Dsui_1882 at 1980.585 kb on + strand, within Dsui_1882 at 1980.585 kb on + strand, within Dsui_1882 at 1980.647 kb on - strand at 1980.702 kb on + strand at 1980.883 kb on - strand at 1980.889 kb on - strand at 1980.973 kb on + strand, within Dsui_1883 at 1981.021 kb on + strand, within Dsui_1883 at 1981.021 kb on + strand, within Dsui_1883
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,977,142 - +0.0 1,977,162 + Dsui_1879 0.64 -1.3 1,977,200 + Dsui_1879 0.67 -0.6 1,977,262 + Dsui_1879 0.74 -0.6 1,977,328 + -1.0 1,977,329 + Dsui_1879 0.80 -1.3 1,977,492 + +0.0 1,977,519 - +1.0 1,977,522 + +1.0 1,977,622 - +1.0 1,977,862 + +1.0 1,977,862 + -0.6 1,977,984 + -0.0 1,977,989 + +0.2 1,977,989 + -0.2 1,977,992 - +0.0 1,977,997 - +0.0 1,978,003 + -0.1 1,978,008 - +1.0 1,978,064 + +0.6 1,978,099 + +1.3 1,978,149 - +1.0 1,978,177 + +0.0 1,978,196 + +0.0 1,978,215 + +0.1 1,978,247 - +0.0 1,978,292 - +0.0 1,978,311 + Dsui_1881 0.13 +0.2 1,978,317 + Dsui_1881 0.14 +0.0 1,978,365 - Dsui_1881 0.16 +0.0 1,978,542 + Dsui_1881 0.25 +0.1 1,978,592 - Dsui_1881 0.27 +1.0 1,978,608 + Dsui_1881 0.28 +0.2 1,978,608 + Dsui_1881 0.28 -0.7 1,978,631 + Dsui_1881 0.29 -0.6 1,978,692 - Dsui_1881 0.32 +1.0 1,978,703 + Dsui_1881 0.32 +0.2 1,978,712 + Dsui_1881 0.33 -0.5 1,978,720 - Dsui_1881 0.33 +1.0 1,978,723 + Dsui_1881 0.33 +0.2 1,979,084 + Dsui_1881 0.51 +0.0 1,979,090 + Dsui_1881 0.51 +0.3 1,979,098 - Dsui_1881 0.52 -0.6 1,979,131 - +1.0 1,979,196 + Dsui_1881 0.57 -0.1 1,979,211 - Dsui_1881 0.57 +0.0 1,979,211 - Dsui_1881 0.57 +0.0 1,979,539 + Dsui_1881 0.74 +0.3 1,979,782 + Dsui_1881 0.85 +0.2 1,979,790 - Dsui_1881 0.86 +0.0 1,979,897 - -2.0 1,979,911 + +0.4 1,979,919 - +0.0 1,979,984 - +0.0 1,980,000 - +0.0 1,980,032 - +1.0 1,980,062 - +1.0 1,980,174 - -1.3 1,980,268 + Dsui_1882 0.26 +1.0 1,980,302 + Dsui_1882 0.33 -0.6 1,980,305 - Dsui_1882 0.33 -1.3 1,980,404 - Dsui_1882 0.53 -0.9 1,980,585 + Dsui_1882 0.89 -0.6 1,980,585 + Dsui_1882 0.89 -1.8 1,980,647 - -0.1 1,980,702 + +1.0 1,980,883 - -1.0 1,980,889 - +1.0 1,980,973 + Dsui_1883 0.12 -0.4 1,981,021 + Dsui_1883 0.15 -0.6 1,981,021 + Dsui_1883 0.15 +0.5
Or see this region's nucleotide sequence