Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1865 and Dsui_1866 are separated by 39 nucleotides Dsui_1866 and Dsui_1867 overlap by 1 nucleotides
Dsui_1865: Dsui_1865 - PAS domain S-box, at 1,959,017 to 1,962,097
_1865
Dsui_1866: Dsui_1866 - CheY-like receiver domain-containing protein, at 1,962,137 to 1,962,496
_1866
Dsui_1867: Dsui_1867 - signal transduction histidine kinase, at 1,962,496 to 1,964,172
_1867
Position (kb)
1962
1963 Strain fitness (log2 ratio)
-2
-1
0
1 at 1961.215 kb on + strand, within Dsui_1865 at 1961.234 kb on + strand at 1961.234 kb on + strand, within Dsui_1865 at 1961.234 kb on + strand, within Dsui_1865 at 1961.258 kb on + strand at 1961.316 kb on + strand, within Dsui_1865 at 1961.359 kb on - strand at 1961.361 kb on + strand at 1961.402 kb on - strand at 1961.608 kb on + strand, within Dsui_1865 at 1961.608 kb on + strand, within Dsui_1865 at 1961.885 kb on - strand at 1961.915 kb on - strand at 1962.075 kb on + strand at 1962.148 kb on + strand at 1962.166 kb on + strand at 1962.237 kb on + strand, within Dsui_1866 at 1962.318 kb on - strand, within Dsui_1866 at 1962.477 kb on + strand at 1962.520 kb on - strand at 1962.530 kb on - strand at 1962.612 kb on + strand at 1962.621 kb on - strand at 1962.637 kb on - strand at 1962.767 kb on + strand, within Dsui_1867 at 1962.829 kb on + strand at 1962.895 kb on - strand, within Dsui_1867 at 1962.944 kb on + strand, within Dsui_1867 at 1962.944 kb on + strand at 1963.051 kb on - strand at 1963.104 kb on + strand, within Dsui_1867 at 1963.134 kb on - strand, within Dsui_1867 at 1963.143 kb on + strand, within Dsui_1867 at 1963.151 kb on + strand, within Dsui_1867 at 1963.151 kb on - strand, within Dsui_1867 at 1963.202 kb on + strand at 1963.204 kb on - strand at 1963.210 kb on - strand, within Dsui_1867 at 1963.374 kb on - strand, within Dsui_1867 at 1963.430 kb on - strand at 1963.479 kb on + strand, within Dsui_1867
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,961,215 + Dsui_1865 0.71 +1.0 1,961,234 + +1.0 1,961,234 + Dsui_1865 0.72 -1.3 1,961,234 + Dsui_1865 0.72 -0.0 1,961,258 + +1.0 1,961,316 + Dsui_1865 0.75 -0.0 1,961,359 - +1.0 1,961,361 + -0.0 1,961,402 - -0.0 1,961,608 + Dsui_1865 0.84 -0.6 1,961,608 + Dsui_1865 0.84 +1.0 1,961,885 - +1.0 1,961,915 - -0.6 1,962,075 + -1.0 1,962,148 + +1.0 1,962,166 + +1.0 1,962,237 + Dsui_1866 0.28 -1.0 1,962,318 - Dsui_1866 0.50 -1.8 1,962,477 + -1.3 1,962,520 - -0.3 1,962,530 - -0.7 1,962,612 + -0.0 1,962,621 - +1.0 1,962,637 - -0.5 1,962,767 + Dsui_1867 0.16 -1.3 1,962,829 + +1.0 1,962,895 - Dsui_1867 0.24 -1.3 1,962,944 + Dsui_1867 0.27 -1.6 1,962,944 + +1.0 1,963,051 - +1.0 1,963,104 + Dsui_1867 0.36 -0.6 1,963,134 - Dsui_1867 0.38 -1.0 1,963,143 + Dsui_1867 0.39 +1.0 1,963,151 + Dsui_1867 0.39 +1.0 1,963,151 - Dsui_1867 0.39 -0.8 1,963,202 + -0.6 1,963,204 - +1.0 1,963,210 - Dsui_1867 0.43 -0.0 1,963,374 - Dsui_1867 0.52 -2.3 1,963,430 - +1.0 1,963,479 + Dsui_1867 0.59 -1.0
Or see this region's nucleotide sequence