Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1864 and Dsui_1865 are separated by 5 nucleotides Dsui_1865 and Dsui_1866 are separated by 39 nucleotides Dsui_1866 and Dsui_1867 overlap by 1 nucleotides
Dsui_1864: Dsui_1864 - hypothetical protein, at 1,957,848 to 1,959,011
_1864
Dsui_1865: Dsui_1865 - PAS domain S-box, at 1,959,017 to 1,962,097
_1865
Dsui_1866: Dsui_1866 - CheY-like receiver domain-containing protein, at 1,962,137 to 1,962,496
_1866
Dsui_1867: Dsui_1867 - signal transduction histidine kinase, at 1,962,496 to 1,964,172
_1867
Position (kb)
1959
1960
1961
1962
1963 Strain fitness (log2 ratio)
-2
-1
0
1 at 1958.133 kb on + strand, within Dsui_1864 at 1958.174 kb on + strand, within Dsui_1864 at 1958.277 kb on + strand, within Dsui_1864 at 1958.357 kb on + strand at 1958.369 kb on + strand, within Dsui_1864 at 1958.412 kb on - strand at 1958.450 kb on - strand at 1958.511 kb on + strand, within Dsui_1864 at 1958.519 kb on - strand at 1958.616 kb on + strand, within Dsui_1864 at 1958.649 kb on + strand, within Dsui_1864 at 1958.667 kb on - strand at 1958.696 kb on + strand, within Dsui_1864 at 1958.704 kb on - strand at 1958.881 kb on + strand, within Dsui_1864 at 1959.231 kb on + strand at 1959.391 kb on - strand at 1959.395 kb on - strand, within Dsui_1865 at 1959.590 kb on + strand, within Dsui_1865 at 1959.598 kb on - strand, within Dsui_1865 at 1959.631 kb on + strand, within Dsui_1865 at 1959.884 kb on + strand, within Dsui_1865 at 1959.891 kb on + strand, within Dsui_1865 at 1959.891 kb on + strand, within Dsui_1865 at 1959.899 kb on - strand at 1959.905 kb on - strand at 1959.920 kb on + strand, within Dsui_1865 at 1960.127 kb on + strand, within Dsui_1865 at 1960.135 kb on - strand at 1960.135 kb on - strand at 1960.182 kb on + strand, within Dsui_1865 at 1960.203 kb on - strand at 1960.286 kb on + strand, within Dsui_1865 at 1960.335 kb on + strand, within Dsui_1865 at 1960.353 kb on - strand, within Dsui_1865 at 1960.366 kb on + strand, within Dsui_1865 at 1960.373 kb on - strand at 1960.560 kb on + strand, within Dsui_1865 at 1960.568 kb on - strand, within Dsui_1865 at 1960.635 kb on - strand, within Dsui_1865 at 1960.733 kb on + strand, within Dsui_1865 at 1960.741 kb on - strand at 1960.741 kb on - strand at 1960.748 kb on - strand at 1960.784 kb on + strand, within Dsui_1865 at 1961.215 kb on + strand, within Dsui_1865 at 1961.234 kb on + strand at 1961.234 kb on + strand, within Dsui_1865 at 1961.234 kb on + strand, within Dsui_1865 at 1961.258 kb on + strand at 1961.316 kb on + strand, within Dsui_1865 at 1961.359 kb on - strand at 1961.361 kb on + strand at 1961.402 kb on - strand at 1961.608 kb on + strand, within Dsui_1865 at 1961.608 kb on + strand, within Dsui_1865 at 1961.885 kb on - strand at 1961.915 kb on - strand at 1962.075 kb on + strand at 1962.148 kb on + strand at 1962.166 kb on + strand at 1962.237 kb on + strand, within Dsui_1866 at 1962.318 kb on - strand, within Dsui_1866 at 1962.477 kb on + strand at 1962.520 kb on - strand at 1962.530 kb on - strand at 1962.612 kb on + strand at 1962.621 kb on - strand at 1962.637 kb on - strand at 1962.767 kb on + strand, within Dsui_1867 at 1962.829 kb on + strand at 1962.895 kb on - strand, within Dsui_1867 at 1962.944 kb on + strand, within Dsui_1867 at 1962.944 kb on + strand at 1963.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,958,133 + Dsui_1864 0.24 -0.0 1,958,174 + Dsui_1864 0.28 -1.0 1,958,277 + Dsui_1864 0.37 -2.1 1,958,357 + +1.0 1,958,369 + Dsui_1864 0.45 +1.0 1,958,412 - -0.0 1,958,450 - -0.0 1,958,511 + Dsui_1864 0.57 -0.0 1,958,519 - -0.6 1,958,616 + Dsui_1864 0.66 -0.6 1,958,649 + Dsui_1864 0.69 -0.6 1,958,667 - +1.0 1,958,696 + Dsui_1864 0.73 -0.0 1,958,704 - +1.0 1,958,881 + Dsui_1864 0.89 -0.0 1,959,231 + -0.0 1,959,391 - -0.0 1,959,395 - Dsui_1865 0.12 -1.7 1,959,590 + Dsui_1865 0.19 -0.0 1,959,598 - Dsui_1865 0.19 -2.2 1,959,631 + Dsui_1865 0.20 +1.0 1,959,884 + Dsui_1865 0.28 +1.0 1,959,891 + Dsui_1865 0.28 -0.0 1,959,891 + Dsui_1865 0.28 -1.3 1,959,899 - +1.0 1,959,905 - +1.0 1,959,920 + Dsui_1865 0.29 -0.0 1,960,127 + Dsui_1865 0.36 -0.6 1,960,135 - +1.0 1,960,135 - -0.0 1,960,182 + Dsui_1865 0.38 -0.0 1,960,203 - +1.0 1,960,286 + Dsui_1865 0.41 -0.6 1,960,335 + Dsui_1865 0.43 +1.0 1,960,353 - Dsui_1865 0.43 -0.6 1,960,366 + Dsui_1865 0.44 -1.0 1,960,373 - -0.0 1,960,560 + Dsui_1865 0.50 -0.0 1,960,568 - Dsui_1865 0.50 -2.3 1,960,635 - Dsui_1865 0.53 -0.2 1,960,733 + Dsui_1865 0.56 -0.6 1,960,741 - -1.0 1,960,741 - +1.0 1,960,748 - -0.6 1,960,784 + Dsui_1865 0.57 +1.0 1,961,215 + Dsui_1865 0.71 +1.0 1,961,234 + +1.0 1,961,234 + Dsui_1865 0.72 -1.3 1,961,234 + Dsui_1865 0.72 -0.0 1,961,258 + +1.0 1,961,316 + Dsui_1865 0.75 -0.0 1,961,359 - +1.0 1,961,361 + -0.0 1,961,402 - -0.0 1,961,608 + Dsui_1865 0.84 -0.6 1,961,608 + Dsui_1865 0.84 +1.0 1,961,885 - +1.0 1,961,915 - -0.6 1,962,075 + -1.0 1,962,148 + +1.0 1,962,166 + +1.0 1,962,237 + Dsui_1866 0.28 -1.0 1,962,318 - Dsui_1866 0.50 -1.8 1,962,477 + -1.3 1,962,520 - -0.3 1,962,530 - -0.7 1,962,612 + -0.0 1,962,621 - +1.0 1,962,637 - -0.5 1,962,767 + Dsui_1867 0.16 -1.3 1,962,829 + +1.0 1,962,895 - Dsui_1867 0.24 -1.3 1,962,944 + Dsui_1867 0.27 -1.6 1,962,944 + +1.0 1,963,051 - +1.0
Or see this region's nucleotide sequence