Strain Fitness in Dechlorosoma suillum PS around Dsui_1824

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1823 and Dsui_1824 are separated by 118 nucleotidesDsui_1824 and Dsui_1825 are separated by 455 nucleotides Dsui_1823: Dsui_1823 - beta-lactamase class D, at 1,920,725 to 1,921,618 _1823 Dsui_1824: Dsui_1824 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,921,737 to 1,923,686 _1824 Dsui_1825: Dsui_1825 - NAD(P)H-dependent nitrite reductase, large subunit, at 1,924,142 to 1,926,580 _1825 Position (kb) 1921 1922 1923 1924Strain fitness (log2 ratio) -2 -1 0 1at 1920.796 kb on + strandat 1920.917 kb on - strand, within Dsui_1823at 1920.985 kb on - strandat 1921.043 kb on + strandat 1921.066 kb on + strandat 1921.091 kb on + strand, within Dsui_1823at 1921.160 kb on + strand, within Dsui_1823at 1921.203 kb on + strand, within Dsui_1823at 1921.272 kb on - strand, within Dsui_1823at 1921.610 kb on + strandat 1921.645 kb on + strandat 1921.673 kb on - strandat 1921.720 kb on - strandat 1921.722 kb on + strandat 1921.813 kb on + strandat 1922.065 kb on - strandat 1922.125 kb on + strand, within Dsui_1824at 1922.145 kb on - strand, within Dsui_1824at 1922.223 kb on + strandat 1922.486 kb on + strand, within Dsui_1824at 1922.524 kb on - strand, within Dsui_1824at 1922.531 kb on + strandat 1922.539 kb on - strandat 1922.539 kb on - strand, within Dsui_1824at 1922.539 kb on - strandat 1922.563 kb on - strandat 1922.569 kb on - strand, within Dsui_1824at 1922.643 kb on + strandat 1922.705 kb on + strand, within Dsui_1824at 1922.722 kb on + strand, within Dsui_1824at 1922.735 kb on - strand, within Dsui_1824at 1922.761 kb on - strand, within Dsui_1824at 1922.780 kb on - strand, within Dsui_1824at 1922.810 kb on + strandat 1922.818 kb on - strand, within Dsui_1824at 1922.823 kb on - strand, within Dsui_1824at 1922.823 kb on - strand, within Dsui_1824at 1922.823 kb on - strandat 1922.981 kb on + strandat 1922.989 kb on - strandat 1923.024 kb on + strandat 1923.032 kb on - strand, within Dsui_1824at 1923.072 kb on + strandat 1923.115 kb on - strandat 1923.142 kb on + strandat 1923.142 kb on + strandat 1923.160 kb on - strandat 1923.272 kb on - strandat 1923.301 kb on - strand, within Dsui_1824at 1923.375 kb on + strandat 1923.378 kb on - strand, within Dsui_1824at 1923.543 kb on - strandat 1923.756 kb on + strandat 1923.937 kb on + strandat 1923.964 kb on - strandat 1924.000 kb on - strandat 1924.073 kb on + strandat 1924.194 kb on + strandat 1924.194 kb on + strandat 1924.202 kb on - strandat 1924.217 kb on + strandat 1924.629 kb on + strand, within Dsui_1825at 1924.648 kb on + strand, within Dsui_1825at 1924.671 kb on + strand, within Dsui_1825

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
remove
1,920,796 + -1.2
1,920,917 - Dsui_1823 0.21 -1.8
1,920,985 - -0.8
1,921,043 + +0.8
1,921,066 + +0.8
1,921,091 + Dsui_1823 0.41 -0.8
1,921,160 + Dsui_1823 0.49 +0.8
1,921,203 + Dsui_1823 0.53 -0.2
1,921,272 - Dsui_1823 0.61 -0.2
1,921,610 + -0.8
1,921,645 + -0.8
1,921,673 - +0.8
1,921,720 - -0.2
1,921,722 + -0.2
1,921,813 + -0.2
1,922,065 - +0.8
1,922,125 + Dsui_1824 0.20 +0.8
1,922,145 - Dsui_1824 0.21 -0.2
1,922,223 + +0.8
1,922,486 + Dsui_1824 0.38 -0.8
1,922,524 - Dsui_1824 0.40 -1.8
1,922,531 + +0.8
1,922,539 - +0.8
1,922,539 - Dsui_1824 0.41 +0.8
1,922,539 - +0.8
1,922,563 - +0.8
1,922,569 - Dsui_1824 0.43 -0.2
1,922,643 + +0.8
1,922,705 + Dsui_1824 0.50 -0.8
1,922,722 + Dsui_1824 0.51 -1.2
1,922,735 - Dsui_1824 0.51 +0.8
1,922,761 - Dsui_1824 0.53 -0.2
1,922,780 - Dsui_1824 0.53 -0.8
1,922,810 + -0.8
1,922,818 - Dsui_1824 0.55 +0.8
1,922,823 - Dsui_1824 0.56 -0.8
1,922,823 - Dsui_1824 0.56 -1.8
1,922,823 - -0.2
1,922,981 + +0.8
1,922,989 - +0.8
1,923,024 + +0.8
1,923,032 - Dsui_1824 0.66 -0.2
1,923,072 + -1.2
1,923,115 - +0.8
1,923,142 + -0.2
1,923,142 + +0.8
1,923,160 - -0.8
1,923,272 - +0.8
1,923,301 - Dsui_1824 0.80 -0.2
1,923,375 + +0.8
1,923,378 - Dsui_1824 0.84 -1.8
1,923,543 - +0.8
1,923,756 + +0.8
1,923,937 + +0.8
1,923,964 - +0.8
1,924,000 - -0.4
1,924,073 + -0.2
1,924,194 + -0.8
1,924,194 + -0.2
1,924,202 - -0.2
1,924,217 + -0.2
1,924,629 + Dsui_1825 0.20 -2.0
1,924,648 + Dsui_1825 0.21 +0.8
1,924,671 + Dsui_1825 0.22 -2.6

Or see this region's nucleotide sequence