Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1814 and Dsui_1815 are separated by 82 nucleotides Dsui_1815 and Dsui_1816 are separated by 108 nucleotides Dsui_1816 and Dsui_1817 are separated by 222 nucleotides
Dsui_1814: Dsui_1814 - cytochrome c1, at 1,911,635 to 1,912,348
_1814
Dsui_1815: Dsui_1815 - glutathione S-transferase, at 1,912,431 to 1,913,027
_1815
Dsui_1816: Dsui_1816 - stringent starvation protein B, at 1,913,136 to 1,913,555
_1816
Dsui_1817: Dsui_1817 - anaerobic dehydrogenase, typically selenocysteine-containing, at 1,913,778 to 1,916,543
_1817
Position (kb)
1913
1914 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1913.108 kb on + strand at 1913.155 kb on + strand at 1913.156 kb on + strand at 1913.164 kb on - strand at 1913.208 kb on - strand, within Dsui_1816 at 1913.208 kb on - strand, within Dsui_1816 at 1913.465 kb on - strand, within Dsui_1816 at 1913.527 kb on + strand at 1913.657 kb on - strand at 1913.683 kb on + strand at 1913.769 kb on + strand at 1913.806 kb on + strand at 1913.814 kb on - strand at 1913.814 kb on - strand at 1913.814 kb on - strand at 1913.814 kb on - strand at 1913.853 kb on + strand at 1913.929 kb on + strand at 1914.040 kb on + strand at 1914.048 kb on - strand at 1914.053 kb on - strand at 1914.058 kb on - strand at 1914.300 kb on + strand, within Dsui_1817 at 1914.301 kb on + strand at 1914.362 kb on + strand, within Dsui_1817 at 1914.385 kb on + strand at 1914.445 kb on + strand, within Dsui_1817 at 1914.551 kb on + strand, within Dsui_1817
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,913,108 + -0.0 1,913,155 + -0.2 1,913,156 + -0.1 1,913,164 - -0.2 1,913,208 - Dsui_1816 0.17 -0.2 1,913,208 - Dsui_1816 0.17 +0.8 1,913,465 - Dsui_1816 0.78 -1.2 1,913,527 + -0.8 1,913,657 - -0.8 1,913,683 + -0.9 1,913,769 + -0.2 1,913,806 + -2.2 1,913,814 - +0.8 1,913,814 - +0.8 1,913,814 - +0.8 1,913,814 - +0.8 1,913,853 + +0.8 1,913,929 + -1.8 1,914,040 + -2.2 1,914,048 - +0.8 1,914,053 - -0.8 1,914,058 - +0.8 1,914,300 + Dsui_1817 0.19 -0.2 1,914,301 + -0.2 1,914,362 + Dsui_1817 0.21 -3.2 1,914,385 + +0.8 1,914,445 + Dsui_1817 0.24 -0.2 1,914,551 + Dsui_1817 0.28 -1.5
Or see this region's nucleotide sequence