Strain Fitness in Dechlorosoma suillum PS around Dsui_1784

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1783 and Dsui_1784 are separated by 243 nucleotidesDsui_1784 and Dsui_1785 are separated by 158 nucleotides Dsui_1783: Dsui_1783 - flagellin/flagellar hook associated protein, at 1,873,070 to 1,873,924 _1783 Dsui_1784: Dsui_1784 - flagellin/flagellar hook associated protein, at 1,874,168 to 1,875,028 _1784 Dsui_1785: Dsui_1785 - Tfp pilus assembly protein PilF, at 1,875,187 to 1,876,857 _1785 Position (kb) 1874 1875 1876Strain fitness (log2 ratio) -2 -1 0 1at 1873.210 kb on - strand, within Dsui_1783at 1873.240 kb on - strand, within Dsui_1783at 1873.249 kb on - strand, within Dsui_1783at 1873.265 kb on + strand, within Dsui_1783at 1873.301 kb on + strand, within Dsui_1783at 1873.336 kb on + strand, within Dsui_1783at 1873.336 kb on - strand, within Dsui_1783at 1873.403 kb on + strand, within Dsui_1783at 1873.421 kb on + strand, within Dsui_1783at 1873.424 kb on - strand, within Dsui_1783at 1873.432 kb on + strand, within Dsui_1783at 1873.440 kb on - strand, within Dsui_1783at 1873.440 kb on - strand, within Dsui_1783at 1873.457 kb on + strand, within Dsui_1783at 1873.491 kb on - strand, within Dsui_1783at 1873.608 kb on - strand, within Dsui_1783at 1873.628 kb on + strand, within Dsui_1783at 1873.675 kb on + strand, within Dsui_1783at 1873.675 kb on + strand, within Dsui_1783at 1873.755 kb on + strand, within Dsui_1783at 1873.760 kb on + strand, within Dsui_1783at 1873.760 kb on + strand, within Dsui_1783at 1873.768 kb on - strand, within Dsui_1783at 1873.768 kb on - strand, within Dsui_1783at 1873.768 kb on - strand, within Dsui_1783at 1873.786 kb on - strand, within Dsui_1783at 1873.791 kb on + strand, within Dsui_1783at 1873.791 kb on + strand, within Dsui_1783at 1873.791 kb on + strand, within Dsui_1783at 1873.798 kb on + strand, within Dsui_1783at 1873.799 kb on - strand, within Dsui_1783at 1873.806 kb on - strand, within Dsui_1783at 1873.808 kb on + strand, within Dsui_1783at 1873.808 kb on + strand, within Dsui_1783at 1873.811 kb on - strand, within Dsui_1783at 1873.811 kb on - strand, within Dsui_1783at 1873.816 kb on - strand, within Dsui_1783at 1873.819 kb on + strand, within Dsui_1783at 1873.819 kb on + strand, within Dsui_1783at 1873.819 kb on + strand, within Dsui_1783at 1873.821 kb on + strand, within Dsui_1783at 1873.821 kb on + strand, within Dsui_1783at 1873.827 kb on - strand, within Dsui_1783at 1873.827 kb on - strand, within Dsui_1783at 1873.827 kb on - strand, within Dsui_1783at 1873.829 kb on - strand, within Dsui_1783at 1873.829 kb on - strand, within Dsui_1783at 1873.840 kb on - strandat 1873.842 kb on + strandat 1873.842 kb on + strandat 1873.850 kb on - strandat 1873.858 kb on + strandat 1873.858 kb on + strandat 1873.858 kb on + strandat 1873.866 kb on - strandat 1873.866 kb on - strandat 1873.874 kb on + strandat 1873.901 kb on - strandat 1873.921 kb on - strandat 1873.985 kb on - strandat 1873.992 kb on - strandat 1874.079 kb on + strandat 1874.081 kb on - strandat 1874.089 kb on - strandat 1874.089 kb on - strandat 1874.094 kb on - strandat 1874.113 kb on + strandat 1874.121 kb on - strandat 1874.123 kb on + strandat 1874.142 kb on + strandat 1874.147 kb on + strandat 1874.148 kb on + strandat 1874.161 kb on - strandat 1874.171 kb on + strandat 1874.171 kb on - strandat 1874.171 kb on - strandat 1874.197 kb on - strandat 1874.197 kb on - strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on - strandat 1874.210 kb on - strandat 1874.210 kb on - strandat 1874.210 kb on - strandat 1874.210 kb on - strandat 1874.226 kb on + strandat 1874.226 kb on - strandat 1874.234 kb on - strandat 1874.263 kb on - strand, within Dsui_1784at 1874.282 kb on + strand, within Dsui_1784at 1874.290 kb on - strand, within Dsui_1784at 1874.371 kb on - strand, within Dsui_1784at 1874.381 kb on - strand, within Dsui_1784at 1874.402 kb on - strand, within Dsui_1784at 1874.421 kb on + strand, within Dsui_1784at 1874.431 kb on + strand, within Dsui_1784at 1874.431 kb on + strand, within Dsui_1784at 1874.485 kb on + strand, within Dsui_1784at 1874.526 kb on + strand, within Dsui_1784at 1874.530 kb on + strand, within Dsui_1784at 1874.531 kb on + strand, within Dsui_1784at 1874.534 kb on - strand, within Dsui_1784at 1874.566 kb on + strand, within Dsui_1784at 1874.711 kb on + strandat 1874.719 kb on - strand, within Dsui_1784at 1874.780 kb on + strand, within Dsui_1784at 1874.838 kb on + strand, within Dsui_1784at 1874.840 kb on - strand, within Dsui_1784at 1874.846 kb on - strand, within Dsui_1784at 1874.872 kb on - strand, within Dsui_1784at 1874.881 kb on + strand, within Dsui_1784at 1874.958 kb on - strandat 1874.969 kb on - strandat 1874.969 kb on - strandat 1874.988 kb on + strandat 1875.003 kb on + strandat 1875.003 kb on + strandat 1875.022 kb on + strandat 1875.037 kb on + strandat 1875.037 kb on + strandat 1875.037 kb on - strandat 1875.045 kb on - strandat 1875.045 kb on - strandat 1875.045 kb on - strandat 1875.075 kb on - strandat 1875.075 kb on - strandat 1875.076 kb on - strandat 1875.211 kb on + strandat 1875.219 kb on + strandat 1875.294 kb on + strandat 1875.302 kb on - strandat 1875.319 kb on + strandat 1875.338 kb on - strandat 1875.399 kb on + strand, within Dsui_1785at 1875.432 kb on + strand, within Dsui_1785at 1875.499 kb on + strand, within Dsui_1785at 1875.500 kb on + strand, within Dsui_1785at 1875.508 kb on - strand, within Dsui_1785at 1875.576 kb on + strandat 1875.620 kb on - strand, within Dsui_1785at 1875.639 kb on - strand, within Dsui_1785at 1875.639 kb on - strand, within Dsui_1785at 1875.664 kb on + strand, within Dsui_1785at 1875.669 kb on + strand, within Dsui_1785at 1875.677 kb on - strand, within Dsui_1785at 1875.677 kb on - strand, within Dsui_1785at 1875.808 kb on + strand, within Dsui_1785at 1875.851 kb on + strand, within Dsui_1785at 1875.851 kb on + strandat 1875.955 kb on + strand, within Dsui_1785at 1875.963 kb on - strand, within Dsui_1785

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,873,210 - Dsui_1783 0.16 -0.3
1,873,240 - Dsui_1783 0.20 -0.3
1,873,249 - Dsui_1783 0.21 -0.3
1,873,265 + Dsui_1783 0.23 -2.5
1,873,301 + Dsui_1783 0.27 -0.8
1,873,336 + Dsui_1783 0.31 -0.2
1,873,336 - Dsui_1783 0.31 -1.0
1,873,403 + Dsui_1783 0.39 -0.2
1,873,421 + Dsui_1783 0.41 +0.8
1,873,424 - Dsui_1783 0.41 -1.5
1,873,432 + Dsui_1783 0.42 +0.8
1,873,440 - Dsui_1783 0.43 -0.4
1,873,440 - Dsui_1783 0.43 -0.3
1,873,457 + Dsui_1783 0.45 -0.8
1,873,491 - Dsui_1783 0.49 +0.0
1,873,608 - Dsui_1783 0.63 +0.0
1,873,628 + Dsui_1783 0.65 +0.8
1,873,675 + Dsui_1783 0.71 -0.2
1,873,675 + Dsui_1783 0.71 +0.8
1,873,755 + Dsui_1783 0.80 -1.2
1,873,760 + Dsui_1783 0.81 -1.2
1,873,760 + Dsui_1783 0.81 -0.2
1,873,768 - Dsui_1783 0.82 -0.2
1,873,768 - Dsui_1783 0.82 -2.5
1,873,768 - Dsui_1783 0.82 -1.3
1,873,786 - Dsui_1783 0.84 -0.1
1,873,791 + Dsui_1783 0.84 -0.2
1,873,791 + Dsui_1783 0.84 +0.8
1,873,791 + Dsui_1783 0.84 +0.8
1,873,798 + Dsui_1783 0.85 -0.8
1,873,799 - Dsui_1783 0.85 -1.5
1,873,806 - Dsui_1783 0.86 -0.6
1,873,808 + Dsui_1783 0.86 -0.8
1,873,808 + Dsui_1783 0.86 +0.8
1,873,811 - Dsui_1783 0.87 -0.5
1,873,811 - Dsui_1783 0.87 +0.5
1,873,816 - Dsui_1783 0.87 -0.3
1,873,819 + Dsui_1783 0.88 -1.5
1,873,819 + Dsui_1783 0.88 +0.8
1,873,819 + Dsui_1783 0.88 -0.2
1,873,821 + Dsui_1783 0.88 -0.2
1,873,821 + Dsui_1783 0.88 -1.2
1,873,827 - Dsui_1783 0.89 +0.8
1,873,827 - Dsui_1783 0.89 -0.2
1,873,827 - Dsui_1783 0.89 -0.4
1,873,829 - Dsui_1783 0.89 +1.4
1,873,829 - Dsui_1783 0.89 -1.1
1,873,840 - -1.0
1,873,842 + -1.5
1,873,842 + +0.8
1,873,850 - -0.3
1,873,858 + -1.2
1,873,858 + -1.2
1,873,858 + +0.8
1,873,866 - -1.7
1,873,866 - +0.9
1,873,874 + -0.2
1,873,901 - -2.5
1,873,921 - -1.3
1,873,985 - -0.8
1,873,992 - -0.8
1,874,079 + -1.2
1,874,081 - -1.2
1,874,089 - -0.2
1,874,089 - -0.2
1,874,094 - -0.2
1,874,113 + -0.2
1,874,121 - +0.8
1,874,123 + +0.8
1,874,142 + -0.2
1,874,147 + -0.2
1,874,148 + +0.8
1,874,161 - -0.2
1,874,171 + +0.8
1,874,171 - -0.2
1,874,171 - -1.8
1,874,197 - -1.2
1,874,197 - -0.2
1,874,202 + -1.2
1,874,202 + +0.8
1,874,202 + +0.8
1,874,202 + -0.8
1,874,202 + +0.8
1,874,202 + -0.8
1,874,202 + -1.2
1,874,202 - +0.8
1,874,210 - +0.8
1,874,210 - +0.8
1,874,210 - -0.2
1,874,210 - +0.8
1,874,226 + -1.5
1,874,226 - -0.2
1,874,234 - -1.5
1,874,263 - Dsui_1784 0.11 -2.2
1,874,282 + Dsui_1784 0.13 +0.8
1,874,290 - Dsui_1784 0.14 -1.2
1,874,371 - Dsui_1784 0.24 -2.0
1,874,381 - Dsui_1784 0.25 +0.8
1,874,402 - Dsui_1784 0.27 +0.8
1,874,421 + Dsui_1784 0.29 -0.2
1,874,431 + Dsui_1784 0.31 +0.8
1,874,431 + Dsui_1784 0.31 +0.8
1,874,485 + Dsui_1784 0.37 -1.2
1,874,526 + Dsui_1784 0.42 +0.8
1,874,530 + Dsui_1784 0.42 +0.8
1,874,531 + Dsui_1784 0.42 -2.2
1,874,534 - Dsui_1784 0.43 -1.8
1,874,566 + Dsui_1784 0.46 -0.2
1,874,711 + +0.8
1,874,719 - Dsui_1784 0.64 +0.8
1,874,780 + Dsui_1784 0.71 -2.0
1,874,838 + Dsui_1784 0.78 +0.8
1,874,840 - Dsui_1784 0.78 -0.2
1,874,846 - Dsui_1784 0.79 +0.8
1,874,872 - Dsui_1784 0.82 -0.2
1,874,881 + Dsui_1784 0.83 -0.2
1,874,958 - +0.8
1,874,969 - -0.2
1,874,969 - -0.2
1,874,988 + -0.2
1,875,003 + -0.2
1,875,003 + +0.8
1,875,022 + -0.8
1,875,037 + -1.8
1,875,037 + +0.8
1,875,037 - +0.8
1,875,045 - -1.8
1,875,045 - -0.8
1,875,045 - -2.7
1,875,075 - +0.8
1,875,075 - +0.8
1,875,076 - +0.8
1,875,211 + +0.8
1,875,219 + -0.8
1,875,294 + -1.2
1,875,302 - +0.8
1,875,319 + -0.8
1,875,338 - +0.2
1,875,399 + Dsui_1785 0.13 +0.8
1,875,432 + Dsui_1785 0.15 +0.8
1,875,499 + Dsui_1785 0.19 -1.5
1,875,500 + Dsui_1785 0.19 -1.5
1,875,508 - Dsui_1785 0.19 -2.4
1,875,576 + -0.2
1,875,620 - Dsui_1785 0.26 +0.8
1,875,639 - Dsui_1785 0.27 -1.8
1,875,639 - Dsui_1785 0.27 +0.9
1,875,664 + Dsui_1785 0.29 +0.8
1,875,669 + Dsui_1785 0.29 -2.0
1,875,677 - Dsui_1785 0.29 +0.8
1,875,677 - Dsui_1785 0.29 -1.2
1,875,808 + Dsui_1785 0.37 -0.2
1,875,851 + Dsui_1785 0.40 -0.2
1,875,851 + +0.8
1,875,955 + Dsui_1785 0.46 -0.2
1,875,963 - Dsui_1785 0.46 +0.0

Or see this region's nucleotide sequence