Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1746 and Dsui_1747 overlap by 4 nucleotides Dsui_1747 and Dsui_1748 are separated by 202 nucleotides Dsui_1748 and Dsui_1749 overlap by 8 nucleotides
Dsui_1746: Dsui_1746 - flagellar biosynthetic protein FliP, at 1,834,106 to 1,834,858
_1746
Dsui_1747: Dsui_1747 - flagellar biosynthetic protein FliO, at 1,834,855 to 1,835,253
_1747
Dsui_1748: Dsui_1748 - flagellar motor switch protein FliN, at 1,835,456 to 1,835,893
_1748
Dsui_1749: Dsui_1749 - flagellar motor switch protein FliM, at 1,835,886 to 1,836,890
_1749
Position (kb)
1835
1836 Strain fitness (log2 ratio)
-2
-1
0
1 at 1834.515 kb on + strand, within Dsui_1746 at 1834.515 kb on + strand, within Dsui_1746 at 1834.515 kb on + strand, within Dsui_1746 at 1834.523 kb on - strand, within Dsui_1746 at 1834.523 kb on - strand, within Dsui_1746 at 1834.523 kb on - strand, within Dsui_1746 at 1834.726 kb on + strand, within Dsui_1746 at 1834.728 kb on + strand, within Dsui_1746 at 1834.734 kb on - strand, within Dsui_1746 at 1834.736 kb on - strand, within Dsui_1746 at 1834.785 kb on + strand at 1834.785 kb on + strand at 1834.789 kb on + strand at 1834.888 kb on - strand at 1834.916 kb on + strand, within Dsui_1747 at 1834.937 kb on + strand, within Dsui_1747 at 1834.945 kb on - strand, within Dsui_1747 at 1834.971 kb on - strand, within Dsui_1747 at 1835.096 kb on - strand, within Dsui_1747 at 1835.173 kb on + strand, within Dsui_1747 at 1835.188 kb on + strand, within Dsui_1747 at 1835.208 kb on - strand, within Dsui_1747 at 1835.222 kb on + strand at 1835.232 kb on + strand at 1835.304 kb on - strand at 1835.359 kb on + strand at 1835.372 kb on + strand at 1835.372 kb on + strand at 1835.372 kb on + strand at 1835.380 kb on - strand at 1835.567 kb on + strand, within Dsui_1748 at 1835.576 kb on + strand, within Dsui_1748 at 1835.621 kb on - strand, within Dsui_1748 at 1835.663 kb on + strand, within Dsui_1748 at 1835.693 kb on + strand, within Dsui_1748 at 1835.693 kb on - strand, within Dsui_1748 at 1835.734 kb on - strand, within Dsui_1748 at 1835.870 kb on - strand at 1835.889 kb on + strand at 1835.911 kb on + strand at 1835.911 kb on + strand at 1835.939 kb on + strand at 1836.023 kb on - strand, within Dsui_1749 at 1836.071 kb on - strand, within Dsui_1749 at 1836.091 kb on + strand, within Dsui_1749 at 1836.196 kb on + strand, within Dsui_1749 at 1836.196 kb on + strand, within Dsui_1749 at 1836.201 kb on - strand, within Dsui_1749 at 1836.204 kb on - strand, within Dsui_1749 at 1836.204 kb on - strand, within Dsui_1749 at 1836.232 kb on - strand, within Dsui_1749 at 1836.296 kb on - strand, within Dsui_1749 at 1836.428 kb on + strand, within Dsui_1749 at 1836.535 kb on - strand, within Dsui_1749 at 1836.543 kb on + strand, within Dsui_1749 at 1836.543 kb on + strand, within Dsui_1749 at 1836.543 kb on + strand, within Dsui_1749 at 1836.556 kb on - strand, within Dsui_1749 at 1836.556 kb on - strand, within Dsui_1749 at 1836.565 kb on + strand, within Dsui_1749 at 1836.589 kb on - strand, within Dsui_1749 at 1836.643 kb on - strand, within Dsui_1749 at 1836.679 kb on - strand, within Dsui_1749 at 1836.689 kb on - strand, within Dsui_1749 at 1836.725 kb on + strand, within Dsui_1749 at 1836.725 kb on + strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.766 kb on + strand, within Dsui_1749 at 1836.841 kb on + strand at 1836.841 kb on + strand at 1836.841 kb on + strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,834,515 + Dsui_1746 0.54 +0.7 1,834,515 + Dsui_1746 0.54 +0.7 1,834,515 + Dsui_1746 0.54 +0.7 1,834,523 - Dsui_1746 0.55 -0.1 1,834,523 - Dsui_1746 0.55 -0.4 1,834,523 - Dsui_1746 0.55 -0.0 1,834,726 + Dsui_1746 0.82 +0.7 1,834,728 + Dsui_1746 0.83 +0.7 1,834,734 - Dsui_1746 0.83 -0.2 1,834,736 - Dsui_1746 0.84 -0.1 1,834,785 + -0.3 1,834,785 + +0.7 1,834,789 + -1.9 1,834,888 - -0.2 1,834,916 + Dsui_1747 0.15 -0.9 1,834,937 + Dsui_1747 0.21 -1.6 1,834,945 - Dsui_1747 0.23 -0.1 1,834,971 - Dsui_1747 0.29 -0.2 1,835,096 - Dsui_1747 0.60 -0.0 1,835,173 + Dsui_1747 0.80 +0.7 1,835,188 + Dsui_1747 0.83 -0.3 1,835,208 - Dsui_1747 0.88 -0.3 1,835,222 + +0.7 1,835,232 + +0.7 1,835,304 - -0.3 1,835,359 + -2.3 1,835,372 + -0.3 1,835,372 + +0.7 1,835,372 + +0.7 1,835,380 - +0.2 1,835,567 + Dsui_1748 0.25 +0.7 1,835,576 + Dsui_1748 0.27 -1.3 1,835,621 - Dsui_1748 0.38 +0.1 1,835,663 + Dsui_1748 0.47 -0.9 1,835,693 + Dsui_1748 0.54 -2.1 1,835,693 - Dsui_1748 0.54 -0.2 1,835,734 - Dsui_1748 0.63 -0.0 1,835,870 - +0.0 1,835,889 + +0.7 1,835,911 + -0.3 1,835,911 + -0.3 1,835,939 + -0.3 1,836,023 - Dsui_1749 0.14 -0.0 1,836,071 - Dsui_1749 0.18 -0.1 1,836,091 + Dsui_1749 0.20 -0.9 1,836,196 + Dsui_1749 0.31 -0.3 1,836,196 + Dsui_1749 0.31 +0.7 1,836,201 - Dsui_1749 0.31 -0.2 1,836,204 - Dsui_1749 0.32 +0.0 1,836,204 - Dsui_1749 0.32 +0.3 1,836,232 - Dsui_1749 0.34 -0.2 1,836,296 - Dsui_1749 0.41 +0.2 1,836,428 + Dsui_1749 0.54 -0.3 1,836,535 - Dsui_1749 0.65 -0.1 1,836,543 + Dsui_1749 0.65 +0.7 1,836,543 + Dsui_1749 0.65 +0.7 1,836,543 + Dsui_1749 0.65 +0.7 1,836,556 - Dsui_1749 0.67 +0.1 1,836,556 - Dsui_1749 0.67 +0.0 1,836,565 + Dsui_1749 0.68 -0.9 1,836,589 - Dsui_1749 0.70 -0.4 1,836,643 - Dsui_1749 0.75 -0.2 1,836,679 - Dsui_1749 0.79 -0.1 1,836,689 - Dsui_1749 0.80 -0.1 1,836,725 + Dsui_1749 0.83 -2.1 1,836,725 + Dsui_1749 0.83 -1.9 1,836,733 - Dsui_1749 0.84 +0.0 1,836,733 - Dsui_1749 0.84 -0.7 1,836,733 - Dsui_1749 0.84 -0.1 1,836,733 - Dsui_1749 0.84 +0.0 1,836,733 - Dsui_1749 0.84 -0.1 1,836,733 - Dsui_1749 0.84 -0.0 1,836,733 - Dsui_1749 0.84 -0.0 1,836,766 + Dsui_1749 0.88 -0.3 1,836,841 + -1.3 1,836,841 + +0.7 1,836,841 + -1.6 1,836,849 - -0.3 1,836,849 - -0.0 1,836,849 - -0.2 1,836,849 - -0.4 1,836,849 - -0.2 1,836,849 - -0.1 1,836,849 - -0.1 1,836,879 + -0.9
Or see this region's nucleotide sequence