Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1718 and Dsui_1719 are separated by 18 nucleotides Dsui_1719 and Dsui_1720 are separated by 3 nucleotides Dsui_1720 and Dsui_1721 are separated by 12 nucleotides
Dsui_1718: Dsui_1718 - chemotaxis signal transduction protein, at 1,807,995 to 1,808,933
_1718
Dsui_1719: Dsui_1719 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,808,952 to 1,809,344
_1719
Dsui_1720: Dsui_1720 - chemotaxis protein, at 1,809,348 to 1,810,214
_1720
Dsui_1721: Dsui_1721 - chemotaxis protein histidine kinase-like protein, at 1,810,227 to 1,812,116
_1721
Position (kb)
1809
1810
1811 Strain fitness (log2 ratio)
-2
-1
0
1 at 1808.437 kb on + strand, within Dsui_1718 at 1808.648 kb on - strand, within Dsui_1718 at 1808.709 kb on + strand, within Dsui_1718 at 1808.722 kb on - strand, within Dsui_1718 at 1808.749 kb on + strand, within Dsui_1718 at 1808.749 kb on + strand, within Dsui_1718 at 1808.846 kb on + strand at 1808.921 kb on + strand at 1808.943 kb on + strand at 1808.961 kb on - strand at 1809.024 kb on - strand, within Dsui_1719 at 1809.066 kb on + strand, within Dsui_1719 at 1809.102 kb on + strand, within Dsui_1719 at 1809.192 kb on - strand, within Dsui_1719 at 1809.249 kb on + strand, within Dsui_1719 at 1809.249 kb on + strand, within Dsui_1719 at 1809.257 kb on - strand, within Dsui_1719 at 1809.299 kb on - strand, within Dsui_1719 at 1809.345 kb on + strand at 1809.353 kb on - strand at 1809.395 kb on + strand at 1809.517 kb on + strand, within Dsui_1720 at 1809.587 kb on + strand, within Dsui_1720 at 1809.650 kb on - strand, within Dsui_1720 at 1809.710 kb on - strand, within Dsui_1720 at 1809.865 kb on - strand, within Dsui_1720 at 1809.936 kb on + strand, within Dsui_1720 at 1809.992 kb on - strand, within Dsui_1720 at 1810.062 kb on + strand, within Dsui_1720 at 1810.191 kb on + strand at 1810.275 kb on - strand at 1810.328 kb on + strand at 1810.475 kb on - strand, within Dsui_1721 at 1810.483 kb on + strand, within Dsui_1721 at 1810.486 kb on - strand, within Dsui_1721 at 1810.491 kb on - strand, within Dsui_1721 at 1810.491 kb on - strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.570 kb on - strand, within Dsui_1721 at 1810.818 kb on + strand, within Dsui_1721 at 1811.080 kb on - strand at 1811.099 kb on + strand, within Dsui_1721 at 1811.196 kb on + strand, within Dsui_1721
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,808,437 + Dsui_1718 0.47 -0.2 1,808,648 - Dsui_1718 0.70 +0.7 1,808,709 + Dsui_1718 0.76 +0.1 1,808,722 - Dsui_1718 0.77 +0.7 1,808,749 + Dsui_1718 0.80 -0.2 1,808,749 + Dsui_1718 0.80 -0.1 1,808,846 + +0.0 1,808,921 + -0.0 1,808,943 + -0.1 1,808,961 - +0.7 1,809,024 - Dsui_1719 0.18 +0.7 1,809,066 + Dsui_1719 0.29 -0.2 1,809,102 + Dsui_1719 0.38 +0.8 1,809,192 - Dsui_1719 0.61 -1.3 1,809,249 + Dsui_1719 0.76 +0.1 1,809,249 + Dsui_1719 0.76 +0.0 1,809,257 - Dsui_1719 0.78 -0.9 1,809,299 - Dsui_1719 0.88 -2.5 1,809,345 + +0.1 1,809,353 - -0.3 1,809,395 + -0.1 1,809,517 + Dsui_1720 0.19 -0.4 1,809,587 + Dsui_1720 0.28 -0.1 1,809,650 - Dsui_1720 0.35 -2.1 1,809,710 - Dsui_1720 0.42 -1.9 1,809,865 - Dsui_1720 0.60 -1.3 1,809,936 + Dsui_1720 0.68 -0.4 1,809,992 - Dsui_1720 0.74 +0.7 1,810,062 + Dsui_1720 0.82 -0.1 1,810,191 + -0.1 1,810,275 - -2.5 1,810,328 + +0.3 1,810,475 - Dsui_1721 0.13 +0.7 1,810,483 + Dsui_1721 0.14 -0.1 1,810,486 - Dsui_1721 0.14 -0.9 1,810,491 - Dsui_1721 0.14 -0.9 1,810,491 - Dsui_1721 0.14 -1.9 1,810,562 + Dsui_1721 0.18 +0.2 1,810,562 + Dsui_1721 0.18 -0.2 1,810,562 + Dsui_1721 0.18 +0.2 1,810,570 - Dsui_1721 0.18 -0.9 1,810,818 + Dsui_1721 0.31 -0.1 1,811,080 - -0.9 1,811,099 + Dsui_1721 0.46 -0.3 1,811,196 + Dsui_1721 0.51 -0.3
Or see this region's nucleotide sequence