Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1676 and Dsui_1677 are separated by 50 nucleotides Dsui_1677 and Dsui_1678 are separated by 24 nucleotides Dsui_1678 and Dsui_1679 are separated by 1 nucleotides Dsui_1679 and Dsui_1680 are separated by 1 nucleotides
Dsui_1676: Dsui_1676 - biopolymer transport protein, at 1,762,132 to 1,762,623
_1676
Dsui_1677: Dsui_1677 - ribosomal protein S4, bacterial/organelle type, at 1,762,674 to 1,763,291
_1677
Dsui_1678: Dsui_1678 - hypothetical protein, at 1,763,316 to 1,763,588
_1678
Dsui_1679: Dsui_1679 - Mg chelatase, cobalamin biosynthesis protein CobN, at 1,763,590 to 1,767,693
_1679
Dsui_1680: Dsui_1680 - TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein, at 1,767,695 to 1,770,007
_1680
Position (kb)
1763
1764
1765
1766
1767
1768 Strain fitness (log2 ratio)
-2
-1
0
1 at 1762.705 kb on - strand at 1762.721 kb on - strand at 1762.836 kb on + strand, within Dsui_1677 at 1763.031 kb on + strand, within Dsui_1677 at 1763.294 kb on - strand at 1763.307 kb on + strand at 1763.327 kb on - strand at 1763.422 kb on + strand at 1763.540 kb on - strand, within Dsui_1678 at 1763.596 kb on - strand at 1763.790 kb on + strand at 1763.933 kb on - strand at 1763.933 kb on - strand at 1764.026 kb on - strand at 1764.070 kb on - strand at 1764.320 kb on - strand, within Dsui_1679 at 1764.425 kb on - strand, within Dsui_1679 at 1764.475 kb on - strand, within Dsui_1679 at 1764.596 kb on + strand at 1764.851 kb on - strand at 1764.900 kb on - strand, within Dsui_1679 at 1765.117 kb on - strand at 1765.122 kb on - strand, within Dsui_1679 at 1765.122 kb on - strand, within Dsui_1679 at 1765.148 kb on - strand at 1765.331 kb on + strand at 1765.513 kb on + strand at 1765.636 kb on + strand, within Dsui_1679 at 1765.680 kb on - strand, within Dsui_1679 at 1765.709 kb on + strand at 1765.747 kb on - strand, within Dsui_1679 at 1765.761 kb on - strand at 1765.791 kb on + strand, within Dsui_1679 at 1765.974 kb on + strand, within Dsui_1679 at 1766.066 kb on - strand, within Dsui_1679 at 1766.076 kb on + strand at 1766.080 kb on - strand at 1766.181 kb on + strand, within Dsui_1679 at 1766.290 kb on - strand, within Dsui_1679 at 1766.573 kb on + strand at 1766.589 kb on - strand at 1766.785 kb on + strand at 1766.792 kb on + strand at 1766.865 kb on + strand at 1766.898 kb on + strand, within Dsui_1679 at 1766.955 kb on - strand, within Dsui_1679 at 1767.037 kb on + strand at 1767.272 kb on - strand, within Dsui_1679 at 1767.272 kb on - strand, within Dsui_1679 at 1767.293 kb on + strand at 1767.316 kb on - strand at 1767.325 kb on - strand at 1767.356 kb on - strand at 1767.372 kb on - strand at 1767.445 kb on - strand at 1767.664 kb on + strand at 1767.765 kb on + strand at 1767.773 kb on - strand at 1767.804 kb on + strand at 1767.852 kb on + strand at 1767.880 kb on - strand at 1767.992 kb on - strand, within Dsui_1680 at 1767.997 kb on - strand, within Dsui_1680 at 1768.204 kb on - strand, within Dsui_1680 at 1768.223 kb on + strand at 1768.259 kb on + strand, within Dsui_1680 at 1768.301 kb on - strand, within Dsui_1680 at 1768.335 kb on + strand, within Dsui_1680 at 1768.335 kb on + strand, within Dsui_1680 at 1768.343 kb on - strand, within Dsui_1680 at 1768.355 kb on - strand at 1768.375 kb on - strand, within Dsui_1680 at 1768.600 kb on + strand at 1768.608 kb on - strand, within Dsui_1680
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,762,705 - +0.6 1,762,721 - +0.6 1,762,836 + Dsui_1677 0.26 -1.5 1,763,031 + Dsui_1677 0.58 -1.0 1,763,294 - -0.4 1,763,307 + -0.4 1,763,327 - +0.6 1,763,422 + -0.4 1,763,540 - Dsui_1678 0.82 -1.0 1,763,596 - +0.6 1,763,790 + +0.6 1,763,933 - +0.6 1,763,933 - -2.5 1,764,026 - +0.6 1,764,070 - +0.6 1,764,320 - Dsui_1679 0.18 -0.4 1,764,425 - Dsui_1679 0.20 +0.6 1,764,475 - Dsui_1679 0.22 -0.4 1,764,596 + +0.6 1,764,851 - +0.6 1,764,900 - Dsui_1679 0.32 -1.4 1,765,117 - +0.6 1,765,122 - Dsui_1679 0.37 +0.6 1,765,122 - Dsui_1679 0.37 -1.4 1,765,148 - +0.6 1,765,331 + -1.0 1,765,513 + -1.0 1,765,636 + Dsui_1679 0.50 -2.2 1,765,680 - Dsui_1679 0.51 +0.6 1,765,709 + +0.6 1,765,747 - Dsui_1679 0.53 -1.0 1,765,761 - +0.6 1,765,791 + Dsui_1679 0.54 -1.4 1,765,974 + Dsui_1679 0.58 -2.0 1,766,066 - Dsui_1679 0.60 +0.6 1,766,076 + +0.6 1,766,080 - -1.0 1,766,181 + Dsui_1679 0.63 -0.4 1,766,290 - Dsui_1679 0.66 +0.6 1,766,573 + -0.4 1,766,589 - +0.6 1,766,785 + +0.6 1,766,792 + +0.6 1,766,865 + -0.4 1,766,898 + Dsui_1679 0.81 -1.0 1,766,955 - Dsui_1679 0.82 -1.7 1,767,037 + -1.7 1,767,272 - Dsui_1679 0.90 +0.6 1,767,272 - Dsui_1679 0.90 -1.4 1,767,293 + +0.6 1,767,316 - -0.9 1,767,325 - +0.6 1,767,356 - -0.4 1,767,372 - +0.6 1,767,445 - +0.6 1,767,664 + +0.6 1,767,765 + -0.4 1,767,773 - -0.4 1,767,804 + -0.9 1,767,852 + +0.6 1,767,880 - -0.4 1,767,992 - Dsui_1680 0.13 +0.6 1,767,997 - Dsui_1680 0.13 +0.6 1,768,204 - Dsui_1680 0.22 -1.4 1,768,223 + +0.6 1,768,259 + Dsui_1680 0.24 -1.7 1,768,301 - Dsui_1680 0.26 -0.4 1,768,335 + Dsui_1680 0.28 -2.4 1,768,335 + Dsui_1680 0.28 -0.9 1,768,343 - Dsui_1680 0.28 +0.6 1,768,355 - +0.6 1,768,375 - Dsui_1680 0.29 +0.6 1,768,600 + +0.6 1,768,608 - Dsui_1680 0.39 +0.6
Or see this region's nucleotide sequence