Strain Fitness in Dechlorosoma suillum PS around Dsui_1670

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1669 and Dsui_1670 are separated by 28 nucleotidesDsui_1670 and Dsui_1671 are separated by 8 nucleotides Dsui_1669: Dsui_1669 - trypsin-like serine protease with C-terminal PDZ domain, at 1,754,072 to 1,755,490 _1669 Dsui_1670: Dsui_1670 - cytochrome c peroxidase, at 1,755,519 to 1,756,628 _1670 Dsui_1671: Dsui_1671 - outer membrane receptor for ferrienterochelin and colicins, at 1,756,637 to 1,759,483 _1671 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -2 -1 0 1at 1754.718 kb on + strandat 1754.872 kb on - strand, within Dsui_1669at 1754.969 kb on + strand, within Dsui_1669at 1755.166 kb on + strandat 1755.171 kb on - strand, within Dsui_1669at 1755.184 kb on - strandat 1755.370 kb on + strandat 1755.462 kb on - strandat 1755.515 kb on - strandat 1755.562 kb on - strandat 1755.676 kb on + strandat 1755.684 kb on - strand, within Dsui_1670at 1755.717 kb on + strand, within Dsui_1670at 1755.782 kb on + strandat 1755.835 kb on - strand, within Dsui_1670at 1755.913 kb on - strandat 1756.039 kb on - strand, within Dsui_1670at 1756.057 kb on + strandat 1756.214 kb on - strandat 1756.351 kb on - strand, within Dsui_1670at 1756.351 kb on - strand, within Dsui_1670at 1756.443 kb on + strandat 1756.568 kb on - strandat 1756.740 kb on + strandat 1756.826 kb on - strandat 1756.865 kb on + strandat 1756.968 kb on - strandat 1756.985 kb on - strand, within Dsui_1671at 1757.179 kb on + strandat 1757.180 kb on + strand, within Dsui_1671at 1757.185 kb on + strand, within Dsui_1671at 1757.185 kb on + strand, within Dsui_1671at 1757.193 kb on - strandat 1757.220 kb on + strand, within Dsui_1671at 1757.269 kb on + strandat 1757.269 kb on + strand, within Dsui_1671at 1757.273 kb on + strand, within Dsui_1671at 1757.274 kb on + strand, within Dsui_1671at 1757.277 kb on - strand, within Dsui_1671at 1757.287 kb on - strandat 1757.338 kb on - strandat 1757.400 kb on + strand, within Dsui_1671at 1757.415 kb on + strandat 1757.415 kb on + strand, within Dsui_1671at 1757.415 kb on + strandat 1757.423 kb on - strandat 1757.468 kb on + strand, within Dsui_1671at 1757.475 kb on - strandat 1757.476 kb on - strandat 1757.569 kb on + strand, within Dsui_1671at 1757.607 kb on - strand, within Dsui_1671

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,754,718 + +0.6
1,754,872 - Dsui_1669 0.56 -2.2
1,754,969 + Dsui_1669 0.63 -0.9
1,755,166 + +0.6
1,755,171 - Dsui_1669 0.77 -1.4
1,755,184 - +0.6
1,755,370 + +0.6
1,755,462 - -2.0
1,755,515 - +0.6
1,755,562 - -0.8
1,755,676 + +0.6
1,755,684 - Dsui_1670 0.15 -0.4
1,755,717 + Dsui_1670 0.18 -1.0
1,755,782 + -1.0
1,755,835 - Dsui_1670 0.28 -2.4
1,755,913 - -1.0
1,756,039 - Dsui_1670 0.47 -0.4
1,756,057 + -0.4
1,756,214 - -0.4
1,756,351 - Dsui_1670 0.75 -1.0
1,756,351 - Dsui_1670 0.75 -0.4
1,756,443 + -0.4
1,756,568 - +0.6
1,756,740 + -0.4
1,756,826 - -1.7
1,756,865 + -0.4
1,756,968 - +0.6
1,756,985 - Dsui_1671 0.12 -0.4
1,757,179 + -0.4
1,757,180 + Dsui_1671 0.19 -1.0
1,757,185 + Dsui_1671 0.19 -0.4
1,757,185 + Dsui_1671 0.19 -1.4
1,757,193 - -0.4
1,757,220 + Dsui_1671 0.20 -0.4
1,757,269 + +0.6
1,757,269 + Dsui_1671 0.22 -0.4
1,757,273 + Dsui_1671 0.22 -0.4
1,757,274 + Dsui_1671 0.22 -2.3
1,757,277 - Dsui_1671 0.22 -0.4
1,757,287 - -0.4
1,757,338 - +0.6
1,757,400 + Dsui_1671 0.27 +0.6
1,757,415 + +0.6
1,757,415 + Dsui_1671 0.27 -1.0
1,757,415 + -0.4
1,757,423 - +0.6
1,757,468 + Dsui_1671 0.29 -1.0
1,757,475 - -0.4
1,757,476 - +0.6
1,757,569 + Dsui_1671 0.33 -1.7
1,757,607 - Dsui_1671 0.34 -1.0

Or see this region's nucleotide sequence