Strain Fitness in Dechlorosoma suillum PS around Dsui_1658

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1657 and Dsui_1658 are separated by 3 nucleotidesDsui_1658 and Dsui_1659 are separated by 350 nucleotides Dsui_1657: Dsui_1657 - carbohydrate-selective porin, at 1,739,300 to 1,740,850 _1657 Dsui_1658: Dsui_1658 - uncharacterized protein probably involved in high-affinity Fe2+ transport, at 1,740,854 to 1,741,405 _1658 Dsui_1659: Dsui_1659 - Uncharacterized protein conserved in bacteria (DUF2325), at 1,741,756 to 1,743,075 _1659 Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -2 -1 0 1at 1739.855 kb on + strand, within Dsui_1657at 1739.909 kb on + strand, within Dsui_1657at 1739.917 kb on - strand, within Dsui_1657at 1740.182 kb on - strand, within Dsui_1657at 1740.274 kb on + strand, within Dsui_1657at 1740.338 kb on - strand, within Dsui_1657at 1740.418 kb on + strandat 1740.480 kb on + strandat 1740.480 kb on + strand, within Dsui_1657at 1740.488 kb on - strand, within Dsui_1657at 1740.506 kb on - strand, within Dsui_1657at 1740.513 kb on + strand, within Dsui_1657at 1740.521 kb on - strand, within Dsui_1657at 1740.571 kb on - strand, within Dsui_1657at 1740.572 kb on - strand, within Dsui_1657at 1740.616 kb on + strandat 1740.659 kb on - strand, within Dsui_1657at 1740.723 kb on + strandat 1740.840 kb on - strandat 1740.854 kb on - strandat 1740.913 kb on + strand, within Dsui_1658at 1740.920 kb on - strand, within Dsui_1658at 1741.014 kb on - strand, within Dsui_1658at 1741.118 kb on - strand, within Dsui_1658at 1741.132 kb on + strand, within Dsui_1658at 1741.196 kb on - strand, within Dsui_1658at 1741.309 kb on - strand, within Dsui_1658at 1741.354 kb on - strandat 1741.402 kb on - strandat 1741.575 kb on + strandat 1741.575 kb on + strandat 1741.580 kb on + strandat 1741.700 kb on - strandat 1741.702 kb on + strandat 1741.747 kb on - strandat 1741.978 kb on - strandat 1742.015 kb on + strandat 1742.020 kb on - strand, within Dsui_1659at 1742.064 kb on - strand, within Dsui_1659at 1742.155 kb on - strandat 1742.176 kb on - strandat 1742.179 kb on + strand, within Dsui_1659at 1742.220 kb on + strand, within Dsui_1659at 1742.269 kb on - strand, within Dsui_1659at 1742.283 kb on - strandat 1742.295 kb on + strand, within Dsui_1659at 1742.324 kb on - strandat 1742.337 kb on - strandat 1742.343 kb on + strand, within Dsui_1659

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,739,855 + Dsui_1657 0.36 -0.4
1,739,909 + Dsui_1657 0.39 -1.0
1,739,917 - Dsui_1657 0.40 -0.2
1,740,182 - Dsui_1657 0.57 -0.0
1,740,274 + Dsui_1657 0.63 +0.6
1,740,338 - Dsui_1657 0.67 -0.2
1,740,418 + -0.4
1,740,480 + +0.6
1,740,480 + Dsui_1657 0.76 -1.4
1,740,488 - Dsui_1657 0.77 -0.7
1,740,506 - Dsui_1657 0.78 +0.2
1,740,513 + Dsui_1657 0.78 +0.6
1,740,521 - Dsui_1657 0.79 -0.5
1,740,571 - Dsui_1657 0.82 -0.8
1,740,572 - Dsui_1657 0.82 -0.1
1,740,616 + +0.6
1,740,659 - Dsui_1657 0.88 -0.3
1,740,723 + +1.6
1,740,840 - -0.4
1,740,854 - +0.1
1,740,913 + Dsui_1658 0.11 -1.4
1,740,920 - Dsui_1658 0.12 -0.3
1,741,014 - Dsui_1658 0.29 -0.7
1,741,118 - Dsui_1658 0.48 -0.3
1,741,132 + Dsui_1658 0.50 -1.4
1,741,196 - Dsui_1658 0.62 -0.2
1,741,309 - Dsui_1658 0.82 -0.4
1,741,354 - -0.5
1,741,402 - -1.6
1,741,575 + +0.6
1,741,575 + +0.6
1,741,580 + +0.6
1,741,700 - +0.6
1,741,702 + -2.0
1,741,747 - +0.6
1,741,978 - +0.6
1,742,015 + -0.4
1,742,020 - Dsui_1659 0.20 +0.6
1,742,064 - Dsui_1659 0.23 -2.4
1,742,155 - -0.4
1,742,176 - -1.0
1,742,179 + Dsui_1659 0.32 -0.4
1,742,220 + Dsui_1659 0.35 -1.4
1,742,269 - Dsui_1659 0.39 -1.7
1,742,283 - -1.0
1,742,295 + Dsui_1659 0.41 -1.0
1,742,324 - -1.0
1,742,337 - +0.6
1,742,343 + Dsui_1659 0.44 -1.0

Or see this region's nucleotide sequence