Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1657 and Dsui_1658 are separated by 3 nucleotides Dsui_1658 and Dsui_1659 are separated by 350 nucleotides
Dsui_1657: Dsui_1657 - carbohydrate-selective porin, at 1,739,300 to 1,740,850
_1657
Dsui_1658: Dsui_1658 - uncharacterized protein probably involved in high-affinity Fe2+ transport, at 1,740,854 to 1,741,405
_1658
Dsui_1659: Dsui_1659 - Uncharacterized protein conserved in bacteria (DUF2325), at 1,741,756 to 1,743,075
_1659
Position (kb)
1740
1741
1742 Strain fitness (log2 ratio)
-2
-1
0
1 at 1739.855 kb on + strand, within Dsui_1657 at 1739.909 kb on + strand, within Dsui_1657 at 1739.917 kb on - strand, within Dsui_1657 at 1740.182 kb on - strand, within Dsui_1657 at 1740.274 kb on + strand, within Dsui_1657 at 1740.338 kb on - strand, within Dsui_1657 at 1740.418 kb on + strand at 1740.480 kb on + strand at 1740.480 kb on + strand, within Dsui_1657 at 1740.488 kb on - strand, within Dsui_1657 at 1740.506 kb on - strand, within Dsui_1657 at 1740.513 kb on + strand, within Dsui_1657 at 1740.521 kb on - strand, within Dsui_1657 at 1740.571 kb on - strand, within Dsui_1657 at 1740.572 kb on - strand, within Dsui_1657 at 1740.616 kb on + strand at 1740.659 kb on - strand, within Dsui_1657 at 1740.723 kb on + strand at 1740.840 kb on - strand at 1740.854 kb on - strand at 1740.913 kb on + strand, within Dsui_1658 at 1740.920 kb on - strand, within Dsui_1658 at 1741.014 kb on - strand, within Dsui_1658 at 1741.118 kb on - strand, within Dsui_1658 at 1741.132 kb on + strand, within Dsui_1658 at 1741.196 kb on - strand, within Dsui_1658 at 1741.309 kb on - strand, within Dsui_1658 at 1741.354 kb on - strand at 1741.402 kb on - strand at 1741.575 kb on + strand at 1741.575 kb on + strand at 1741.580 kb on + strand at 1741.700 kb on - strand at 1741.702 kb on + strand at 1741.747 kb on - strand at 1741.978 kb on - strand at 1742.015 kb on + strand at 1742.020 kb on - strand, within Dsui_1659 at 1742.064 kb on - strand, within Dsui_1659 at 1742.155 kb on - strand at 1742.176 kb on - strand at 1742.179 kb on + strand, within Dsui_1659 at 1742.220 kb on + strand, within Dsui_1659 at 1742.269 kb on - strand, within Dsui_1659 at 1742.283 kb on - strand at 1742.295 kb on + strand, within Dsui_1659 at 1742.324 kb on - strand at 1742.337 kb on - strand at 1742.343 kb on + strand, within Dsui_1659
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,739,855 + Dsui_1657 0.36 -0.4 1,739,909 + Dsui_1657 0.39 -1.0 1,739,917 - Dsui_1657 0.40 -0.2 1,740,182 - Dsui_1657 0.57 -0.0 1,740,274 + Dsui_1657 0.63 +0.6 1,740,338 - Dsui_1657 0.67 -0.2 1,740,418 + -0.4 1,740,480 + +0.6 1,740,480 + Dsui_1657 0.76 -1.4 1,740,488 - Dsui_1657 0.77 -0.7 1,740,506 - Dsui_1657 0.78 +0.2 1,740,513 + Dsui_1657 0.78 +0.6 1,740,521 - Dsui_1657 0.79 -0.5 1,740,571 - Dsui_1657 0.82 -0.8 1,740,572 - Dsui_1657 0.82 -0.1 1,740,616 + +0.6 1,740,659 - Dsui_1657 0.88 -0.3 1,740,723 + +1.6 1,740,840 - -0.4 1,740,854 - +0.1 1,740,913 + Dsui_1658 0.11 -1.4 1,740,920 - Dsui_1658 0.12 -0.3 1,741,014 - Dsui_1658 0.29 -0.7 1,741,118 - Dsui_1658 0.48 -0.3 1,741,132 + Dsui_1658 0.50 -1.4 1,741,196 - Dsui_1658 0.62 -0.2 1,741,309 - Dsui_1658 0.82 -0.4 1,741,354 - -0.5 1,741,402 - -1.6 1,741,575 + +0.6 1,741,575 + +0.6 1,741,580 + +0.6 1,741,700 - +0.6 1,741,702 + -2.0 1,741,747 - +0.6 1,741,978 - +0.6 1,742,015 + -0.4 1,742,020 - Dsui_1659 0.20 +0.6 1,742,064 - Dsui_1659 0.23 -2.4 1,742,155 - -0.4 1,742,176 - -1.0 1,742,179 + Dsui_1659 0.32 -0.4 1,742,220 + Dsui_1659 0.35 -1.4 1,742,269 - Dsui_1659 0.39 -1.7 1,742,283 - -1.0 1,742,295 + Dsui_1659 0.41 -1.0 1,742,324 - -1.0 1,742,337 - +0.6 1,742,343 + Dsui_1659 0.44 -1.0
Or see this region's nucleotide sequence