Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1578 and Dsui_1579 are separated by 214 nucleotides Dsui_1579 and Dsui_1580 are separated by 186 nucleotides
Dsui_1578: Dsui_1578 - pyruvate dehydrogenase E1 component, homodimeric type, at 1,652,262 to 1,654,934
_1578
Dsui_1579: Dsui_1579 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,655,149 to 1,656,357
_1579
Dsui_1580: Dsui_1580 - PAS domain S-box, at 1,656,544 to 1,659,249
_1580
Position (kb)
1655
1656
1657 Strain fitness (log2 ratio)
-2
-1
0
1 at 1654.248 kb on + strand, within Dsui_1578 at 1654.389 kb on - strand, within Dsui_1578 at 1654.408 kb on + strand, within Dsui_1578 at 1654.781 kb on - strand at 1654.837 kb on - strand at 1654.985 kb on - strand at 1655.023 kb on - strand at 1655.073 kb on - strand at 1655.073 kb on - strand at 1655.083 kb on - strand at 1655.091 kb on - strand at 1655.155 kb on - strand at 1655.198 kb on + strand at 1655.203 kb on + strand at 1655.264 kb on - strand at 1655.342 kb on - strand, within Dsui_1579 at 1655.400 kb on - strand, within Dsui_1579 at 1655.405 kb on + strand, within Dsui_1579 at 1655.478 kb on - strand, within Dsui_1579 at 1655.523 kb on + strand, within Dsui_1579 at 1655.536 kb on - strand, within Dsui_1579 at 1655.705 kb on + strand at 1655.722 kb on - strand, within Dsui_1579 at 1655.732 kb on - strand, within Dsui_1579 at 1655.916 kb on - strand, within Dsui_1579 at 1656.019 kb on - strand, within Dsui_1579 at 1656.058 kb on + strand, within Dsui_1579 at 1656.158 kb on + strand at 1656.204 kb on + strand, within Dsui_1579 at 1656.208 kb on + strand at 1656.279 kb on + strand at 1656.297 kb on - strand at 1656.359 kb on + strand at 1656.377 kb on + strand at 1656.442 kb on - strand at 1656.552 kb on - strand at 1656.552 kb on - strand at 1656.614 kb on - strand at 1656.625 kb on - strand at 1656.653 kb on + strand at 1656.841 kb on + strand, within Dsui_1580 at 1656.891 kb on - strand at 1656.953 kb on + strand, within Dsui_1580 at 1656.961 kb on - strand at 1656.961 kb on - strand, within Dsui_1580 at 1656.981 kb on + strand, within Dsui_1580 at 1657.049 kb on + strand, within Dsui_1580 at 1657.219 kb on - strand at 1657.320 kb on + strand, within Dsui_1580
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,654,248 + Dsui_1578 0.74 -1.4 1,654,389 - Dsui_1578 0.80 -1.2 1,654,408 + Dsui_1578 0.80 -1.0 1,654,781 - -1.1 1,654,837 - -2.1 1,654,985 - -0.8 1,655,023 - -0.3 1,655,073 - +0.6 1,655,073 - -1.4 1,655,083 - +0.6 1,655,091 - -2.7 1,655,155 - -1.0 1,655,198 + -1.0 1,655,203 + +0.6 1,655,264 - +1.3 1,655,342 - Dsui_1579 0.16 -2.2 1,655,400 - Dsui_1579 0.21 -1.0 1,655,405 + Dsui_1579 0.21 -1.0 1,655,478 - Dsui_1579 0.27 -1.7 1,655,523 + Dsui_1579 0.31 -1.0 1,655,536 - Dsui_1579 0.32 -0.3 1,655,705 + +0.6 1,655,722 - Dsui_1579 0.47 -0.4 1,655,732 - Dsui_1579 0.48 +0.2 1,655,916 - Dsui_1579 0.63 -2.4 1,656,019 - Dsui_1579 0.72 -0.4 1,656,058 + Dsui_1579 0.75 -2.2 1,656,158 + +0.6 1,656,204 + Dsui_1579 0.87 -1.0 1,656,208 + -0.4 1,656,279 + +0.6 1,656,297 - -1.0 1,656,359 + -0.4 1,656,377 + +0.6 1,656,442 - -0.4 1,656,552 - -0.4 1,656,552 - -0.4 1,656,614 - +0.6 1,656,625 - -1.0 1,656,653 + -1.6 1,656,841 + Dsui_1580 0.11 -0.6 1,656,891 - +0.6 1,656,953 + Dsui_1580 0.15 -1.5 1,656,961 - +0.6 1,656,961 - Dsui_1580 0.15 -2.0 1,656,981 + Dsui_1580 0.16 -1.0 1,657,049 + Dsui_1580 0.19 -1.4 1,657,219 - -1.0 1,657,320 + Dsui_1580 0.29 -1.3
Or see this region's nucleotide sequence