Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1510 and Dsui_1511 are separated by 441 nucleotides Dsui_1511 and Dsui_1512 are separated by 63 nucleotides
Dsui_1510: Dsui_1510 - transposase, IS30 family, at 1,573,740 to 1,574,900
_1510
Dsui_1511: Dsui_1511 - hypothetical protein, at 1,575,342 to 1,575,947
_1511
Dsui_1512: Dsui_1512 - Na+/H+ antiporter NhaD-like permease, at 1,576,011 to 1,577,246
_1512
Position (kb)
1575
1576 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1574.926 kb on + strand at 1574.926 kb on + strand at 1574.926 kb on + strand at 1574.970 kb on - strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.979 kb on + strand at 1574.987 kb on - strand at 1574.987 kb on - strand at 1574.987 kb on - strand at 1574.987 kb on - strand at 1574.987 kb on - strand at 1574.987 kb on - strand at 1574.987 kb on - strand at 1574.987 kb on - strand at 1574.987 kb on - strand at 1574.987 kb on - strand at 1574.987 kb on - strand at 1575.008 kb on + strand at 1575.013 kb on + strand at 1575.065 kb on + strand at 1575.072 kb on + strand at 1575.080 kb on - strand at 1575.080 kb on - strand at 1575.147 kb on + strand at 1575.150 kb on - strand at 1575.166 kb on + strand at 1575.217 kb on - strand at 1575.267 kb on - strand at 1575.298 kb on + strand at 1575.298 kb on + strand at 1575.303 kb on + strand at 1575.315 kb on + strand at 1575.323 kb on - strand at 1575.347 kb on - strand at 1575.353 kb on - strand at 1575.371 kb on - strand at 1575.373 kb on - strand at 1575.381 kb on + strand at 1575.404 kb on + strand, within Dsui_1511 at 1575.412 kb on + strand, within Dsui_1511 at 1575.412 kb on + strand, within Dsui_1511 at 1575.412 kb on + strand, within Dsui_1511 at 1575.420 kb on - strand, within Dsui_1511 at 1575.452 kb on + strand, within Dsui_1511 at 1575.458 kb on - strand, within Dsui_1511 at 1575.482 kb on + strand, within Dsui_1511 at 1575.482 kb on + strand, within Dsui_1511 at 1575.490 kb on - strand, within Dsui_1511 at 1575.548 kb on + strand, within Dsui_1511 at 1575.548 kb on + strand, within Dsui_1511 at 1575.548 kb on + strand, within Dsui_1511 at 1575.548 kb on + strand, within Dsui_1511 at 1575.548 kb on + strand, within Dsui_1511 at 1575.548 kb on + strand at 1575.556 kb on - strand, within Dsui_1511 at 1575.556 kb on - strand, within Dsui_1511 at 1575.556 kb on - strand, within Dsui_1511 at 1575.556 kb on - strand, within Dsui_1511 at 1575.615 kb on - strand, within Dsui_1511 at 1575.623 kb on + strand, within Dsui_1511 at 1575.636 kb on - strand, within Dsui_1511 at 1575.636 kb on - strand, within Dsui_1511 at 1575.725 kb on - strand, within Dsui_1511 at 1575.757 kb on + strand, within Dsui_1511 at 1575.784 kb on - strand, within Dsui_1511 at 1575.799 kb on + strand, within Dsui_1511 at 1575.799 kb on + strand, within Dsui_1511 at 1575.807 kb on - strand, within Dsui_1511 at 1575.856 kb on + strand, within Dsui_1511 at 1575.858 kb on + strand, within Dsui_1511 at 1575.861 kb on + strand, within Dsui_1511 at 1575.863 kb on + strand, within Dsui_1511 at 1575.871 kb on - strand, within Dsui_1511 at 1575.877 kb on + strand, within Dsui_1511 at 1575.877 kb on + strand, within Dsui_1511 at 1575.877 kb on + strand, within Dsui_1511 at 1575.877 kb on + strand, within Dsui_1511 at 1575.877 kb on + strand, within Dsui_1511 at 1575.877 kb on + strand, within Dsui_1511 at 1575.885 kb on - strand, within Dsui_1511 at 1575.885 kb on - strand, within Dsui_1511 at 1575.885 kb on - strand, within Dsui_1511 at 1575.885 kb on - strand, within Dsui_1511 at 1575.885 kb on - strand, within Dsui_1511 at 1575.940 kb on - strand at 1575.947 kb on + strand at 1575.947 kb on + strand at 1575.990 kb on + strand at 1575.998 kb on + strand at 1576.005 kb on - strand at 1576.034 kb on - strand at 1576.071 kb on + strand at 1576.071 kb on + strand at 1576.079 kb on - strand at 1576.108 kb on - strand at 1576.199 kb on - strand, within Dsui_1512 at 1576.201 kb on + strand, within Dsui_1512 at 1576.228 kb on - strand, within Dsui_1512 at 1576.253 kb on + strand, within Dsui_1512 at 1576.261 kb on - strand, within Dsui_1512 at 1576.262 kb on + strand, within Dsui_1512 at 1576.269 kb on + strand, within Dsui_1512 at 1576.272 kb on - strand, within Dsui_1512 at 1576.272 kb on - strand, within Dsui_1512 at 1576.274 kb on + strand, within Dsui_1512 at 1576.306 kb on - strand, within Dsui_1512 at 1576.404 kb on - strand, within Dsui_1512 at 1576.407 kb on + strand, within Dsui_1512 at 1576.415 kb on - strand, within Dsui_1512 at 1576.424 kb on + strand, within Dsui_1512 at 1576.432 kb on - strand, within Dsui_1512 at 1576.437 kb on + strand, within Dsui_1512 at 1576.437 kb on + strand, within Dsui_1512 at 1576.438 kb on - strand, within Dsui_1512 at 1576.475 kb on + strand, within Dsui_1512 at 1576.475 kb on - strand, within Dsui_1512 at 1576.508 kb on + strand, within Dsui_1512 at 1576.516 kb on - strand, within Dsui_1512 at 1576.516 kb on - strand at 1576.516 kb on - strand, within Dsui_1512 at 1576.557 kb on + strand, within Dsui_1512 at 1576.558 kb on - strand, within Dsui_1512 at 1576.649 kb on - strand, within Dsui_1512 at 1576.664 kb on + strand, within Dsui_1512 at 1576.688 kb on + strand, within Dsui_1512 at 1576.694 kb on + strand, within Dsui_1512 at 1576.695 kb on + strand, within Dsui_1512 at 1576.696 kb on - strand, within Dsui_1512 at 1576.702 kb on - strand, within Dsui_1512 at 1576.709 kb on + strand, within Dsui_1512 at 1576.709 kb on - strand, within Dsui_1512 at 1576.739 kb on + strand, within Dsui_1512 at 1576.752 kb on + strand at 1576.760 kb on - strand, within Dsui_1512 at 1576.831 kb on + strand, within Dsui_1512 at 1576.831 kb on + strand, within Dsui_1512 at 1576.841 kb on + strand, within Dsui_1512 at 1576.917 kb on + strand, within Dsui_1512 at 1576.922 kb on - strand, within Dsui_1512
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,574,926 + +0.7 1,574,926 + -0.3 1,574,926 + -0.3 1,574,970 - -0.2 1,574,979 + +0.7 1,574,979 + -0.9 1,574,979 + -3.3 1,574,979 + +0.7 1,574,979 + -0.3 1,574,979 + +0.7 1,574,979 + +0.7 1,574,979 + -1.3 1,574,979 + -0.3 1,574,979 + -0.3 1,574,979 + +0.7 1,574,979 + +0.7 1,574,979 + +0.7 1,574,987 - -0.6 1,574,987 - -0.4 1,574,987 - -0.2 1,574,987 - +0.1 1,574,987 - -0.5 1,574,987 - -1.0 1,574,987 - +0.8 1,574,987 - -0.5 1,574,987 - -0.5 1,574,987 - -0.1 1,574,987 - -0.7 1,575,008 + +0.7 1,575,013 + +0.7 1,575,065 + +0.7 1,575,072 + +0.7 1,575,080 - -0.2 1,575,080 - -0.1 1,575,147 + +0.7 1,575,150 - -0.9 1,575,166 + +0.7 1,575,217 - +0.2 1,575,267 - -0.3 1,575,298 + -2.6 1,575,298 + +0.7 1,575,303 + -3.0 1,575,315 + +0.7 1,575,323 - -0.1 1,575,347 - -0.7 1,575,353 - -0.8 1,575,371 - +0.9 1,575,373 - +0.1 1,575,381 + -0.3 1,575,404 + Dsui_1511 0.10 -1.3 1,575,412 + Dsui_1511 0.12 -0.3 1,575,412 + Dsui_1511 0.12 +0.1 1,575,412 + Dsui_1511 0.12 -1.3 1,575,420 - Dsui_1511 0.13 -0.0 1,575,452 + Dsui_1511 0.18 -0.3 1,575,458 - Dsui_1511 0.19 -0.1 1,575,482 + Dsui_1511 0.23 +0.7 1,575,482 + Dsui_1511 0.23 +0.7 1,575,490 - Dsui_1511 0.24 -0.9 1,575,548 + Dsui_1511 0.34 -2.9 1,575,548 + Dsui_1511 0.34 -0.3 1,575,548 + Dsui_1511 0.34 -0.9 1,575,548 + Dsui_1511 0.34 -0.3 1,575,548 + Dsui_1511 0.34 -1.3 1,575,548 + +0.7 1,575,556 - Dsui_1511 0.35 -0.7 1,575,556 - Dsui_1511 0.35 -0.5 1,575,556 - Dsui_1511 0.35 -0.3 1,575,556 - Dsui_1511 0.35 -0.3 1,575,615 - Dsui_1511 0.45 +0.1 1,575,623 + Dsui_1511 0.46 +0.7 1,575,636 - Dsui_1511 0.49 -0.8 1,575,636 - Dsui_1511 0.49 -0.6 1,575,725 - Dsui_1511 0.63 -1.1 1,575,757 + Dsui_1511 0.68 -0.9 1,575,784 - Dsui_1511 0.73 -1.0 1,575,799 + Dsui_1511 0.75 +0.7 1,575,799 + Dsui_1511 0.75 +0.7 1,575,807 - Dsui_1511 0.77 -0.7 1,575,856 + Dsui_1511 0.85 +0.7 1,575,858 + Dsui_1511 0.85 +0.7 1,575,861 + Dsui_1511 0.86 -1.6 1,575,863 + Dsui_1511 0.86 +0.7 1,575,871 - Dsui_1511 0.87 -0.8 1,575,877 + Dsui_1511 0.88 +0.7 1,575,877 + Dsui_1511 0.88 -0.3 1,575,877 + Dsui_1511 0.88 -0.9 1,575,877 + Dsui_1511 0.88 +0.7 1,575,877 + Dsui_1511 0.88 +0.7 1,575,877 + Dsui_1511 0.88 -1.3 1,575,885 - Dsui_1511 0.90 -3.5 1,575,885 - Dsui_1511 0.90 -2.1 1,575,885 - Dsui_1511 0.90 +0.7 1,575,885 - Dsui_1511 0.90 -0.7 1,575,885 - Dsui_1511 0.90 -1.3 1,575,940 - +0.1 1,575,947 + +0.7 1,575,947 + +0.7 1,575,990 + -0.9 1,575,998 + -0.3 1,576,005 - -1.1 1,576,034 - +0.7 1,576,071 + -1.3 1,576,071 + -0.3 1,576,079 - -0.6 1,576,108 - -0.7 1,576,199 - Dsui_1512 0.15 -0.1 1,576,201 + Dsui_1512 0.15 -0.9 1,576,228 - Dsui_1512 0.18 -0.3 1,576,253 + Dsui_1512 0.20 -2.0 1,576,261 - Dsui_1512 0.20 -0.2 1,576,262 + Dsui_1512 0.20 +0.7 1,576,269 + Dsui_1512 0.21 -0.9 1,576,272 - Dsui_1512 0.21 -0.3 1,576,272 - Dsui_1512 0.21 -0.6 1,576,274 + Dsui_1512 0.21 +0.7 1,576,306 - Dsui_1512 0.24 -0.0 1,576,404 - Dsui_1512 0.32 -0.2 1,576,407 + Dsui_1512 0.32 -0.3 1,576,415 - Dsui_1512 0.33 -0.7 1,576,424 + Dsui_1512 0.33 -0.3 1,576,432 - Dsui_1512 0.34 -0.1 1,576,437 + Dsui_1512 0.34 -1.5 1,576,437 + Dsui_1512 0.34 -1.3 1,576,438 - Dsui_1512 0.35 -0.9 1,576,475 + Dsui_1512 0.38 -0.9 1,576,475 - Dsui_1512 0.38 -0.5 1,576,508 + Dsui_1512 0.40 -0.9 1,576,516 - Dsui_1512 0.41 -0.6 1,576,516 - +1.7 1,576,516 - Dsui_1512 0.41 +1.9 1,576,557 + Dsui_1512 0.44 +0.7 1,576,558 - Dsui_1512 0.44 -1.4 1,576,649 - Dsui_1512 0.52 -1.3 1,576,664 + Dsui_1512 0.53 -1.6 1,576,688 + Dsui_1512 0.55 -2.8 1,576,694 + Dsui_1512 0.55 -0.9 1,576,695 + Dsui_1512 0.55 +0.7 1,576,696 - Dsui_1512 0.55 -0.5 1,576,702 - Dsui_1512 0.56 -1.3 1,576,709 + Dsui_1512 0.56 -2.1 1,576,709 - Dsui_1512 0.56 -0.6 1,576,739 + Dsui_1512 0.59 -1.3 1,576,752 + +0.7 1,576,760 - Dsui_1512 0.61 +0.7 1,576,831 + Dsui_1512 0.66 +0.7 1,576,831 + Dsui_1512 0.66 -0.1 1,576,841 + Dsui_1512 0.67 -2.1 1,576,917 + Dsui_1512 0.73 +0.7 1,576,922 - Dsui_1512 0.74 -0.8
Or see this region's nucleotide sequence