Strain Fitness in Dechlorosoma suillum PS around Dsui_1493

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1492 and Dsui_1493 are separated by 16 nucleotidesDsui_1493 and Dsui_1494 are separated by 27 nucleotides Dsui_1492: Dsui_1492 - ATPase with chaperone activity, ATP-binding subunit, at 1,553,581 to 1,556,430 _1492 Dsui_1493: Dsui_1493 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase, at 1,556,447 to 1,557,877 _1493 Dsui_1494: Dsui_1494 - ATP-dependent metalloprotease FtsH, at 1,557,905 to 1,559,734 _1494 Position (kb) 1556 1557 1558Strain fitness (log2 ratio) -2 -1 0 1 2at 1555.537 kb on + strand, within Dsui_1492at 1555.572 kb on - strand, within Dsui_1492at 1555.663 kb on + strand, within Dsui_1492at 1555.663 kb on + strand, within Dsui_1492at 1555.663 kb on + strand, within Dsui_1492at 1555.766 kb on - strand, within Dsui_1492at 1555.779 kb on - strand, within Dsui_1492at 1555.943 kb on + strand, within Dsui_1492at 1555.951 kb on - strand, within Dsui_1492at 1556.112 kb on - strand, within Dsui_1492at 1556.210 kb on - strandat 1556.259 kb on + strandat 1556.379 kb on - strandat 1556.448 kb on + strandat 1556.514 kb on - strandat 1556.558 kb on - strandat 1556.820 kb on - strand, within Dsui_1493at 1556.825 kb on - strand, within Dsui_1493at 1556.878 kb on + strand, within Dsui_1493at 1556.977 kb on - strand, within Dsui_1493at 1557.229 kb on + strand, within Dsui_1493at 1557.233 kb on + strand, within Dsui_1493at 1557.438 kb on - strand, within Dsui_1493at 1557.553 kb on - strand, within Dsui_1493at 1557.591 kb on + strand, within Dsui_1493at 1557.617 kb on - strand, within Dsui_1493at 1557.678 kb on + strand, within Dsui_1493at 1557.678 kb on + strand, within Dsui_1493at 1557.717 kb on + strand, within Dsui_1493at 1557.717 kb on + strand, within Dsui_1493at 1557.725 kb on + strandat 1557.727 kb on + strand, within Dsui_1493at 1557.733 kb on - strand, within Dsui_1493at 1557.733 kb on - strand, within Dsui_1493at 1557.733 kb on - strand, within Dsui_1493at 1557.735 kb on - strandat 1558.223 kb on - strand, within Dsui_1494at 1558.225 kb on + strand, within Dsui_1494at 1558.227 kb on + strand, within Dsui_1494at 1558.340 kb on - strand, within Dsui_1494at 1558.361 kb on + strand, within Dsui_1494at 1558.404 kb on - strand, within Dsui_1494at 1558.571 kb on + strand, within Dsui_1494

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
remove
1,555,537 + Dsui_1492 0.69 -0.3
1,555,572 - Dsui_1492 0.70 -0.3
1,555,663 + Dsui_1492 0.73 -1.1
1,555,663 + Dsui_1492 0.73 -0.9
1,555,663 + Dsui_1492 0.73 -1.3
1,555,766 - Dsui_1492 0.77 -0.9
1,555,779 - Dsui_1492 0.77 -1.3
1,555,943 + Dsui_1492 0.83 -0.9
1,555,951 - Dsui_1492 0.83 +0.7
1,556,112 - Dsui_1492 0.89 +0.7
1,556,210 - +0.7
1,556,259 + +0.5
1,556,379 - -1.9
1,556,448 + -0.3
1,556,514 - +0.7
1,556,558 - -1.6
1,556,820 - Dsui_1493 0.26 -0.3
1,556,825 - Dsui_1493 0.26 +0.7
1,556,878 + Dsui_1493 0.30 -1.6
1,556,977 - Dsui_1493 0.37 -0.3
1,557,229 + Dsui_1493 0.55 +0.1
1,557,233 + Dsui_1493 0.55 -2.6
1,557,438 - Dsui_1493 0.69 -1.3
1,557,553 - Dsui_1493 0.77 -0.9
1,557,591 + Dsui_1493 0.80 -0.9
1,557,617 - Dsui_1493 0.82 +0.7
1,557,678 + Dsui_1493 0.86 -0.3
1,557,678 + Dsui_1493 0.86 +0.7
1,557,717 + Dsui_1493 0.89 +0.7
1,557,717 + Dsui_1493 0.89 +2.7
1,557,725 + -0.3
1,557,727 + Dsui_1493 0.89 -1.6
1,557,733 - Dsui_1493 0.90 -1.6
1,557,733 - Dsui_1493 0.90 -0.3
1,557,733 - Dsui_1493 0.90 -1.6
1,557,735 - -0.3
1,558,223 - Dsui_1494 0.17 -0.3
1,558,225 + Dsui_1494 0.17 +0.7
1,558,227 + Dsui_1494 0.18 -1.6
1,558,340 - Dsui_1494 0.24 +0.7
1,558,361 + Dsui_1494 0.25 +1.7
1,558,404 - Dsui_1494 0.27 +0.7
1,558,571 + Dsui_1494 0.36 -0.3

Or see this region's nucleotide sequence