Strain Fitness in Dechlorosoma suillum PS around Dsui_1476

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1475 and Dsui_1476 overlap by 4 nucleotidesDsui_1476 and Dsui_1477 overlap by 4 nucleotides Dsui_1475: Dsui_1475 - hypothetical protein, at 1,537,368 to 1,538,777 _1475 Dsui_1476: Dsui_1476 - hypothetical protein, at 1,538,774 to 1,540,891 _1476 Dsui_1477: Dsui_1477 - hypothetical protein, at 1,540,888 to 1,543,035 _1477 Position (kb) 1538 1539 1540 1541Strain fitness (log2 ratio) -3 -2 -1 0 1at 1537.802 kb on + strand, within Dsui_1475at 1537.802 kb on + strand, within Dsui_1475at 1537.803 kb on + strand, within Dsui_1475at 1537.870 kb on + strand, within Dsui_1475at 1538.066 kb on + strand, within Dsui_1475at 1538.101 kb on + strand, within Dsui_1475at 1538.128 kb on - strand, within Dsui_1475at 1538.158 kb on + strand, within Dsui_1475at 1538.171 kb on + strand, within Dsui_1475at 1538.328 kb on - strand, within Dsui_1475at 1538.342 kb on - strand, within Dsui_1475at 1538.386 kb on - strand, within Dsui_1475at 1538.425 kb on - strand, within Dsui_1475at 1538.425 kb on - strand, within Dsui_1475at 1538.462 kb on - strand, within Dsui_1475at 1538.532 kb on - strand, within Dsui_1475at 1538.569 kb on - strand, within Dsui_1475at 1538.602 kb on - strand, within Dsui_1475at 1538.613 kb on + strand, within Dsui_1475at 1538.802 kb on + strandat 1538.831 kb on + strandat 1538.838 kb on - strandat 1538.839 kb on - strandat 1538.900 kb on - strandat 1538.947 kb on + strandat 1538.947 kb on + strandat 1538.947 kb on + strandat 1538.947 kb on + strandat 1538.947 kb on + strandat 1538.955 kb on - strandat 1538.955 kb on - strandat 1538.955 kb on - strandat 1538.955 kb on - strandat 1539.047 kb on + strand, within Dsui_1476at 1539.080 kb on + strand, within Dsui_1476at 1539.151 kb on + strand, within Dsui_1476at 1539.172 kb on - strand, within Dsui_1476at 1539.223 kb on + strand, within Dsui_1476at 1539.231 kb on - strand, within Dsui_1476at 1539.299 kb on + strand, within Dsui_1476at 1539.302 kb on - strand, within Dsui_1476at 1539.304 kb on + strand, within Dsui_1476at 1539.304 kb on + strand, within Dsui_1476at 1539.304 kb on + strand, within Dsui_1476at 1539.312 kb on - strand, within Dsui_1476at 1539.319 kb on - strand, within Dsui_1476at 1539.370 kb on + strand, within Dsui_1476at 1539.370 kb on + strand, within Dsui_1476at 1539.411 kb on - strand, within Dsui_1476at 1539.490 kb on - strand, within Dsui_1476at 1539.529 kb on + strand, within Dsui_1476at 1539.545 kb on + strand, within Dsui_1476at 1539.550 kb on + strand, within Dsui_1476at 1539.553 kb on - strand, within Dsui_1476at 1539.558 kb on - strand, within Dsui_1476at 1539.558 kb on - strand, within Dsui_1476at 1539.560 kb on + strand, within Dsui_1476at 1539.570 kb on + strand, within Dsui_1476at 1539.583 kb on - strand, within Dsui_1476at 1539.588 kb on - strand, within Dsui_1476at 1539.807 kb on + strand, within Dsui_1476at 1539.855 kb on - strand, within Dsui_1476at 1539.879 kb on - strand, within Dsui_1476at 1539.898 kb on - strand, within Dsui_1476at 1539.907 kb on + strand, within Dsui_1476at 1539.909 kb on + strand, within Dsui_1476at 1539.917 kb on + strand, within Dsui_1476at 1539.917 kb on - strand, within Dsui_1476at 1539.922 kb on + strand, within Dsui_1476at 1540.003 kb on + strand, within Dsui_1476at 1540.026 kb on - strand, within Dsui_1476at 1540.043 kb on - strand, within Dsui_1476at 1540.045 kb on - strand, within Dsui_1476at 1540.063 kb on + strand, within Dsui_1476at 1540.089 kb on - strand, within Dsui_1476at 1540.137 kb on + strand, within Dsui_1476at 1540.177 kb on + strand, within Dsui_1476at 1540.231 kb on - strand, within Dsui_1476at 1540.316 kb on + strand, within Dsui_1476at 1540.351 kb on + strand, within Dsui_1476at 1540.459 kb on + strand, within Dsui_1476at 1540.564 kb on + strand, within Dsui_1476at 1540.611 kb on + strand, within Dsui_1476at 1540.613 kb on + strand, within Dsui_1476at 1540.804 kb on - strandat 1540.835 kb on + strandat 1540.880 kb on + strandat 1540.956 kb on + strandat 1540.972 kb on - strandat 1541.005 kb on + strandat 1541.010 kb on + strandat 1541.013 kb on - strandat 1541.117 kb on - strand, within Dsui_1477at 1541.143 kb on - strand, within Dsui_1477at 1541.165 kb on - strand, within Dsui_1477at 1541.259 kb on - strand, within Dsui_1477at 1541.263 kb on - strand, within Dsui_1477at 1541.276 kb on + strand, within Dsui_1477at 1541.288 kb on + strand, within Dsui_1477at 1541.477 kb on - strand, within Dsui_1477at 1541.505 kb on + strand, within Dsui_1477at 1541.522 kb on - strand, within Dsui_1477at 1541.537 kb on + strand, within Dsui_1477at 1541.545 kb on - strand, within Dsui_1477at 1541.609 kb on - strand, within Dsui_1477at 1541.721 kb on - strand, within Dsui_1477at 1541.748 kb on + strand, within Dsui_1477at 1541.774 kb on + strand, within Dsui_1477at 1541.849 kb on + strand, within Dsui_1477

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,537,802 + Dsui_1475 0.31 -0.8
1,537,802 + Dsui_1475 0.31 -0.0
1,537,803 + Dsui_1475 0.31 -0.1
1,537,870 + Dsui_1475 0.36 +0.1
1,538,066 + Dsui_1475 0.50 +0.2
1,538,101 + Dsui_1475 0.52 -0.1
1,538,128 - Dsui_1475 0.54 +0.7
1,538,158 + Dsui_1475 0.56 -0.1
1,538,171 + Dsui_1475 0.57 -0.1
1,538,328 - Dsui_1475 0.68 -1.9
1,538,342 - Dsui_1475 0.69 -0.9
1,538,386 - Dsui_1475 0.72 -0.3
1,538,425 - Dsui_1475 0.75 +0.7
1,538,425 - Dsui_1475 0.75 +1.3
1,538,462 - Dsui_1475 0.78 -2.5
1,538,532 - Dsui_1475 0.83 -2.5
1,538,569 - Dsui_1475 0.85 +0.7
1,538,602 - Dsui_1475 0.88 -0.9
1,538,613 + Dsui_1475 0.88 -0.1
1,538,802 + -0.4
1,538,831 + -0.5
1,538,838 - +0.7
1,538,839 - -1.3
1,538,900 - +0.7
1,538,947 + -0.2
1,538,947 + -0.2
1,538,947 + -0.4
1,538,947 + +0.2
1,538,947 + +0.1
1,538,955 - +0.7
1,538,955 - +0.7
1,538,955 - -1.6
1,538,955 - +0.7
1,539,047 + Dsui_1476 0.13 -0.5
1,539,080 + Dsui_1476 0.14 -0.4
1,539,151 + Dsui_1476 0.18 -1.2
1,539,172 - Dsui_1476 0.19 -1.6
1,539,223 + Dsui_1476 0.21 -0.0
1,539,231 - Dsui_1476 0.22 -1.1
1,539,299 + Dsui_1476 0.25 -1.5
1,539,302 - Dsui_1476 0.25 +0.7
1,539,304 + Dsui_1476 0.25 -0.8
1,539,304 + Dsui_1476 0.25 -0.3
1,539,304 + Dsui_1476 0.25 -0.5
1,539,312 - Dsui_1476 0.25 +0.7
1,539,319 - Dsui_1476 0.26 -0.9
1,539,370 + Dsui_1476 0.28 -2.5
1,539,370 + Dsui_1476 0.28 +0.3
1,539,411 - Dsui_1476 0.30 +0.7
1,539,490 - Dsui_1476 0.34 -0.3
1,539,529 + Dsui_1476 0.36 -1.1
1,539,545 + Dsui_1476 0.36 -1.8
1,539,550 + Dsui_1476 0.37 -0.9
1,539,553 - Dsui_1476 0.37 -0.3
1,539,558 - Dsui_1476 0.37 -1.9
1,539,558 - Dsui_1476 0.37 +0.7
1,539,560 + Dsui_1476 0.37 +0.1
1,539,570 + Dsui_1476 0.38 -1.3
1,539,583 - Dsui_1476 0.38 +0.7
1,539,588 - Dsui_1476 0.38 -3.0
1,539,807 + Dsui_1476 0.49 -0.7
1,539,855 - Dsui_1476 0.51 +0.1
1,539,879 - Dsui_1476 0.52 -0.9
1,539,898 - Dsui_1476 0.53 +0.1
1,539,907 + Dsui_1476 0.53 -0.9
1,539,909 + Dsui_1476 0.54 +0.1
1,539,917 + Dsui_1476 0.54 -0.2
1,539,917 - Dsui_1476 0.54 +0.7
1,539,922 + Dsui_1476 0.54 -1.3
1,540,003 + Dsui_1476 0.58 -0.2
1,540,026 - Dsui_1476 0.59 +0.7
1,540,043 - Dsui_1476 0.60 +0.7
1,540,045 - Dsui_1476 0.60 -2.3
1,540,063 + Dsui_1476 0.61 -0.2
1,540,089 - Dsui_1476 0.62 +0.7
1,540,137 + Dsui_1476 0.64 -0.3
1,540,177 + Dsui_1476 0.66 -3.2
1,540,231 - Dsui_1476 0.69 +0.7
1,540,316 + Dsui_1476 0.73 -0.5
1,540,351 + Dsui_1476 0.74 -0.7
1,540,459 + Dsui_1476 0.80 -0.3
1,540,564 + Dsui_1476 0.85 -0.9
1,540,611 + Dsui_1476 0.87 -0.7
1,540,613 + Dsui_1476 0.87 -0.2
1,540,804 - -0.3
1,540,835 + -0.3
1,540,880 + -0.3
1,540,956 + -0.2
1,540,972 - -0.3
1,541,005 + -0.4
1,541,010 + -0.9
1,541,013 - -0.9
1,541,117 - Dsui_1477 0.11 -0.9
1,541,143 - Dsui_1477 0.12 -2.1
1,541,165 - Dsui_1477 0.13 -0.3
1,541,259 - Dsui_1477 0.17 +0.7
1,541,263 - Dsui_1477 0.17 -1.9
1,541,276 + Dsui_1477 0.18 -0.4
1,541,288 + Dsui_1477 0.19 +0.2
1,541,477 - Dsui_1477 0.27 +0.7
1,541,505 + Dsui_1477 0.29 -0.3
1,541,522 - Dsui_1477 0.30 -1.3
1,541,537 + Dsui_1477 0.30 -0.3
1,541,545 - Dsui_1477 0.31 +0.7
1,541,609 - Dsui_1477 0.34 +0.7
1,541,721 - Dsui_1477 0.39 -2.3
1,541,748 + Dsui_1477 0.40 +0.4
1,541,774 + Dsui_1477 0.41 -0.6
1,541,849 + Dsui_1477 0.45 -0.3

Or see this region's nucleotide sequence