Strain Fitness in Dechlorosoma suillum PS around Dsui_1475

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1473 and Dsui_1475 are separated by 461 nucleotidesDsui_1475 and Dsui_1476 overlap by 4 nucleotides Dsui_1473: Dsui_1473 - methyl-accepting chemotaxis protein, at 1,535,776 to 1,536,906 _1473 Dsui_1475: Dsui_1475 - hypothetical protein, at 1,537,368 to 1,538,777 _1475 Dsui_1476: Dsui_1476 - hypothetical protein, at 1,538,774 to 1,540,891 _1476 Position (kb) 1537 1538 1539Strain fitness (log2 ratio) -3 -2 -1 0 1at 1536.480 kb on + strand, within Dsui_1473at 1536.488 kb on - strand, within Dsui_1473at 1536.531 kb on + strand, within Dsui_1473at 1536.531 kb on + strand, within Dsui_1473at 1536.598 kb on - strand, within Dsui_1473at 1536.625 kb on + strand, within Dsui_1473at 1536.694 kb on - strand, within Dsui_1473at 1536.696 kb on + strand, within Dsui_1473at 1536.711 kb on + strand, within Dsui_1473at 1536.719 kb on - strand, within Dsui_1473at 1536.774 kb on + strand, within Dsui_1473at 1536.909 kb on + strandat 1536.990 kb on + strandat 1536.998 kb on - strandat 1537.032 kb on + strandat 1537.042 kb on + strandat 1537.042 kb on + strandat 1537.051 kb on - strandat 1537.068 kb on + strandat 1537.113 kb on - strandat 1537.122 kb on - strandat 1537.128 kb on - strandat 1537.156 kb on + strandat 1537.173 kb on - strandat 1537.221 kb on + strandat 1537.237 kb on - strandat 1537.245 kb on + strandat 1537.250 kb on + strandat 1537.253 kb on - strandat 1537.253 kb on - strandat 1537.309 kb on - strandat 1537.357 kb on + strandat 1537.370 kb on + strandat 1537.380 kb on - strandat 1537.413 kb on - strandat 1537.413 kb on - strandat 1537.413 kb on - strandat 1537.413 kb on - strandat 1537.467 kb on + strandat 1537.467 kb on + strandat 1537.473 kb on + strandat 1537.475 kb on - strandat 1537.475 kb on - strandat 1537.482 kb on - strandat 1537.500 kb on + strandat 1537.532 kb on + strand, within Dsui_1475at 1537.551 kb on + strand, within Dsui_1475at 1537.603 kb on + strand, within Dsui_1475at 1537.620 kb on + strand, within Dsui_1475at 1537.628 kb on - strand, within Dsui_1475at 1537.628 kb on - strand, within Dsui_1475at 1537.633 kb on - strand, within Dsui_1475at 1537.672 kb on + strand, within Dsui_1475at 1537.706 kb on + strand, within Dsui_1475at 1537.715 kb on + strand, within Dsui_1475at 1537.755 kb on + strand, within Dsui_1475at 1537.802 kb on + strand, within Dsui_1475at 1537.802 kb on + strand, within Dsui_1475at 1537.803 kb on + strand, within Dsui_1475at 1537.870 kb on + strand, within Dsui_1475at 1538.066 kb on + strand, within Dsui_1475at 1538.101 kb on + strand, within Dsui_1475at 1538.128 kb on - strand, within Dsui_1475at 1538.158 kb on + strand, within Dsui_1475at 1538.171 kb on + strand, within Dsui_1475at 1538.328 kb on - strand, within Dsui_1475at 1538.342 kb on - strand, within Dsui_1475at 1538.386 kb on - strand, within Dsui_1475at 1538.425 kb on - strand, within Dsui_1475at 1538.425 kb on - strand, within Dsui_1475at 1538.462 kb on - strand, within Dsui_1475at 1538.532 kb on - strand, within Dsui_1475at 1538.569 kb on - strand, within Dsui_1475at 1538.602 kb on - strand, within Dsui_1475at 1538.613 kb on + strand, within Dsui_1475at 1538.802 kb on + strandat 1538.831 kb on + strandat 1538.838 kb on - strandat 1538.839 kb on - strandat 1538.900 kb on - strandat 1538.947 kb on + strandat 1538.947 kb on + strandat 1538.947 kb on + strandat 1538.947 kb on + strandat 1538.947 kb on + strandat 1538.955 kb on - strandat 1538.955 kb on - strandat 1538.955 kb on - strandat 1538.955 kb on - strandat 1539.047 kb on + strand, within Dsui_1476at 1539.080 kb on + strand, within Dsui_1476at 1539.151 kb on + strand, within Dsui_1476at 1539.172 kb on - strand, within Dsui_1476at 1539.223 kb on + strand, within Dsui_1476at 1539.231 kb on - strand, within Dsui_1476at 1539.299 kb on + strand, within Dsui_1476at 1539.302 kb on - strand, within Dsui_1476at 1539.304 kb on + strand, within Dsui_1476at 1539.304 kb on + strand, within Dsui_1476at 1539.304 kb on + strand, within Dsui_1476at 1539.312 kb on - strand, within Dsui_1476at 1539.319 kb on - strand, within Dsui_1476at 1539.370 kb on + strand, within Dsui_1476at 1539.370 kb on + strand, within Dsui_1476at 1539.411 kb on - strand, within Dsui_1476at 1539.490 kb on - strand, within Dsui_1476at 1539.529 kb on + strand, within Dsui_1476at 1539.545 kb on + strand, within Dsui_1476at 1539.550 kb on + strand, within Dsui_1476at 1539.553 kb on - strand, within Dsui_1476at 1539.558 kb on - strand, within Dsui_1476at 1539.558 kb on - strand, within Dsui_1476at 1539.560 kb on + strand, within Dsui_1476at 1539.570 kb on + strand, within Dsui_1476at 1539.583 kb on - strand, within Dsui_1476at 1539.588 kb on - strand, within Dsui_1476

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,536,480 + Dsui_1473 0.62 +0.7
1,536,488 - Dsui_1473 0.63 +0.7
1,536,531 + Dsui_1473 0.67 -0.3
1,536,531 + Dsui_1473 0.67 +0.7
1,536,598 - Dsui_1473 0.73 -0.9
1,536,625 + Dsui_1473 0.75 -0.3
1,536,694 - Dsui_1473 0.81 -1.6
1,536,696 + Dsui_1473 0.81 -1.3
1,536,711 + Dsui_1473 0.83 -0.2
1,536,719 - Dsui_1473 0.83 +0.7
1,536,774 + Dsui_1473 0.88 +0.7
1,536,909 + +0.7
1,536,990 + -1.3
1,536,998 - +0.7
1,537,032 + +0.7
1,537,042 + -0.3
1,537,042 + -0.3
1,537,051 - -3.4
1,537,068 + +0.7
1,537,113 - -0.9
1,537,122 - -2.1
1,537,128 - -0.6
1,537,156 + +0.7
1,537,173 - -1.4
1,537,221 + -0.3
1,537,237 - -1.3
1,537,245 + +0.7
1,537,250 + -0.3
1,537,253 - -0.7
1,537,253 - -0.6
1,537,309 - -1.3
1,537,357 + -0.1
1,537,370 + -0.1
1,537,380 - -0.3
1,537,413 - -0.3
1,537,413 - -0.3
1,537,413 - +0.7
1,537,413 - +0.7
1,537,467 + +0.1
1,537,467 + -0.1
1,537,473 + -0.1
1,537,475 - +0.7
1,537,475 - +0.7
1,537,482 - +0.7
1,537,500 + -0.5
1,537,532 + Dsui_1475 0.12 -0.1
1,537,551 + Dsui_1475 0.13 -0.1
1,537,603 + Dsui_1475 0.17 -0.5
1,537,620 + Dsui_1475 0.18 +0.0
1,537,628 - Dsui_1475 0.18 +0.7
1,537,628 - Dsui_1475 0.18 -0.9
1,537,633 - Dsui_1475 0.19 +0.7
1,537,672 + Dsui_1475 0.22 -0.0
1,537,706 + Dsui_1475 0.24 -0.1
1,537,715 + Dsui_1475 0.25 +0.1
1,537,755 + Dsui_1475 0.27 -0.3
1,537,802 + Dsui_1475 0.31 -0.8
1,537,802 + Dsui_1475 0.31 -0.0
1,537,803 + Dsui_1475 0.31 -0.1
1,537,870 + Dsui_1475 0.36 +0.1
1,538,066 + Dsui_1475 0.50 +0.2
1,538,101 + Dsui_1475 0.52 -0.1
1,538,128 - Dsui_1475 0.54 +0.7
1,538,158 + Dsui_1475 0.56 -0.1
1,538,171 + Dsui_1475 0.57 -0.1
1,538,328 - Dsui_1475 0.68 -1.9
1,538,342 - Dsui_1475 0.69 -0.9
1,538,386 - Dsui_1475 0.72 -0.3
1,538,425 - Dsui_1475 0.75 +0.7
1,538,425 - Dsui_1475 0.75 +1.3
1,538,462 - Dsui_1475 0.78 -2.5
1,538,532 - Dsui_1475 0.83 -2.5
1,538,569 - Dsui_1475 0.85 +0.7
1,538,602 - Dsui_1475 0.88 -0.9
1,538,613 + Dsui_1475 0.88 -0.1
1,538,802 + -0.4
1,538,831 + -0.5
1,538,838 - +0.7
1,538,839 - -1.3
1,538,900 - +0.7
1,538,947 + -0.2
1,538,947 + -0.2
1,538,947 + -0.4
1,538,947 + +0.2
1,538,947 + +0.1
1,538,955 - +0.7
1,538,955 - +0.7
1,538,955 - -1.6
1,538,955 - +0.7
1,539,047 + Dsui_1476 0.13 -0.5
1,539,080 + Dsui_1476 0.14 -0.4
1,539,151 + Dsui_1476 0.18 -1.2
1,539,172 - Dsui_1476 0.19 -1.6
1,539,223 + Dsui_1476 0.21 -0.0
1,539,231 - Dsui_1476 0.22 -1.1
1,539,299 + Dsui_1476 0.25 -1.5
1,539,302 - Dsui_1476 0.25 +0.7
1,539,304 + Dsui_1476 0.25 -0.8
1,539,304 + Dsui_1476 0.25 -0.3
1,539,304 + Dsui_1476 0.25 -0.5
1,539,312 - Dsui_1476 0.25 +0.7
1,539,319 - Dsui_1476 0.26 -0.9
1,539,370 + Dsui_1476 0.28 -2.5
1,539,370 + Dsui_1476 0.28 +0.3
1,539,411 - Dsui_1476 0.30 +0.7
1,539,490 - Dsui_1476 0.34 -0.3
1,539,529 + Dsui_1476 0.36 -1.1
1,539,545 + Dsui_1476 0.36 -1.8
1,539,550 + Dsui_1476 0.37 -0.9
1,539,553 - Dsui_1476 0.37 -0.3
1,539,558 - Dsui_1476 0.37 -1.9
1,539,558 - Dsui_1476 0.37 +0.7
1,539,560 + Dsui_1476 0.37 +0.1
1,539,570 + Dsui_1476 0.38 -1.3
1,539,583 - Dsui_1476 0.38 +0.7
1,539,588 - Dsui_1476 0.38 -3.0

Or see this region's nucleotide sequence