Strain Fitness in Dechlorosoma suillum PS around Dsui_1472

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1470 and Dsui_1471 are separated by 56 nucleotidesDsui_1471 and Dsui_1472 are separated by 4 nucleotidesDsui_1472 and Dsui_1473 are separated by 118 nucleotides Dsui_1470: Dsui_1470 - pantoate--beta-alanine ligase, at 1,533,285 to 1,534,109 _1470 Dsui_1471: Dsui_1471 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,534,166 to 1,534,978 _1471 Dsui_1472: Dsui_1472 - deoxynucleoside kinase, at 1,534,983 to 1,535,657 _1472 Dsui_1473: Dsui_1473 - methyl-accepting chemotaxis protein, at 1,535,776 to 1,536,906 _1473 Position (kb) 1534 1535 1536Strain fitness (log2 ratio) -3 -2 -1 0 1at 1534.139 kb on - strandat 1534.175 kb on - strandat 1534.175 kb on - strandat 1535.159 kb on + strand, within Dsui_1472at 1535.279 kb on + strand, within Dsui_1472at 1535.303 kb on + strand, within Dsui_1472at 1535.389 kb on - strand, within Dsui_1472at 1535.466 kb on + strand, within Dsui_1472at 1535.536 kb on - strand, within Dsui_1472at 1535.781 kb on + strandat 1535.789 kb on - strandat 1535.828 kb on - strandat 1535.946 kb on + strand, within Dsui_1473at 1535.988 kb on + strand, within Dsui_1473at 1535.993 kb on - strandat 1535.998 kb on + strand, within Dsui_1473at 1536.004 kb on + strand, within Dsui_1473at 1536.102 kb on + strand, within Dsui_1473at 1536.102 kb on + strand, within Dsui_1473at 1536.102 kb on - strand, within Dsui_1473at 1536.102 kb on - strand, within Dsui_1473at 1536.110 kb on - strand, within Dsui_1473at 1536.110 kb on - strand, within Dsui_1473at 1536.136 kb on - strand, within Dsui_1473at 1536.159 kb on - strand, within Dsui_1473at 1536.250 kb on + strand, within Dsui_1473at 1536.273 kb on + strand, within Dsui_1473at 1536.311 kb on + strand, within Dsui_1473at 1536.480 kb on + strand, within Dsui_1473at 1536.488 kb on - strand, within Dsui_1473at 1536.531 kb on + strand, within Dsui_1473at 1536.531 kb on + strand, within Dsui_1473at 1536.598 kb on - strand, within Dsui_1473at 1536.625 kb on + strand, within Dsui_1473

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,534,139 - -0.5
1,534,175 - -0.4
1,534,175 - -0.2
1,535,159 + Dsui_1472 0.26 -0.8
1,535,279 + Dsui_1472 0.44 -0.3
1,535,303 + Dsui_1472 0.47 -2.3
1,535,389 - Dsui_1472 0.60 +0.0
1,535,466 + Dsui_1472 0.72 +0.7
1,535,536 - Dsui_1472 0.82 -0.4
1,535,781 + -0.9
1,535,789 - +0.7
1,535,828 - +0.7
1,535,946 + Dsui_1473 0.15 -0.3
1,535,988 + Dsui_1473 0.19 +0.7
1,535,993 - +0.7
1,535,998 + Dsui_1473 0.20 +0.7
1,536,004 + Dsui_1473 0.20 -1.3
1,536,102 + Dsui_1473 0.29 +0.7
1,536,102 + Dsui_1473 0.29 -0.3
1,536,102 - Dsui_1473 0.29 -2.1
1,536,102 - Dsui_1473 0.29 -1.9
1,536,110 - Dsui_1473 0.30 -0.3
1,536,110 - Dsui_1473 0.30 -3.0
1,536,136 - Dsui_1473 0.32 +0.7
1,536,159 - Dsui_1473 0.34 +0.7
1,536,250 + Dsui_1473 0.42 -0.9
1,536,273 + Dsui_1473 0.44 -1.6
1,536,311 + Dsui_1473 0.47 -0.3
1,536,480 + Dsui_1473 0.62 +0.7
1,536,488 - Dsui_1473 0.63 +0.7
1,536,531 + Dsui_1473 0.67 -0.3
1,536,531 + Dsui_1473 0.67 +0.7
1,536,598 - Dsui_1473 0.73 -0.9
1,536,625 + Dsui_1473 0.75 -0.3

Or see this region's nucleotide sequence