Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1456 and Dsui_1457 are separated by 170 nucleotides Dsui_1457 and Dsui_1458 are separated by 101 nucleotides Dsui_1458 and Dsui_1459 are separated by 1 nucleotides
Dsui_1456: Dsui_1456 - HD-GYP domain-containing protein, at 1,515,104 to 1,516,692
_1456
Dsui_1457: Dsui_1457 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,516,863 to 1,517,258
_1457
Dsui_1458: Dsui_1458 - phosphohistidine phosphatase SixA, at 1,517,360 to 1,517,851
_1458
Dsui_1459: Dsui_1459 - hypothetical protein, at 1,517,853 to 1,519,376
_1459
Position (kb)
1517
1518 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1516.385 kb on - strand, within Dsui_1456 at 1516.432 kb on + strand, within Dsui_1456 at 1516.541 kb on + strand at 1516.541 kb on + strand at 1516.559 kb on - strand at 1516.667 kb on + strand at 1516.809 kb on - strand at 1516.882 kb on + strand at 1516.887 kb on + strand at 1517.071 kb on + strand, within Dsui_1457 at 1517.164 kb on - strand at 1517.318 kb on + strand at 1517.386 kb on + strand at 1517.407 kb on + strand at 1517.424 kb on + strand, within Dsui_1458 at 1517.467 kb on - strand, within Dsui_1458 at 1517.490 kb on + strand, within Dsui_1458 at 1517.574 kb on + strand, within Dsui_1458 at 1517.584 kb on + strand, within Dsui_1458 at 1517.585 kb on + strand, within Dsui_1458 at 1517.635 kb on + strand, within Dsui_1458 at 1517.668 kb on + strand, within Dsui_1458 at 1517.676 kb on - strand, within Dsui_1458 at 1517.691 kb on - strand, within Dsui_1458 at 1517.704 kb on + strand, within Dsui_1458 at 1517.928 kb on - strand at 1517.991 kb on - strand at 1518.337 kb on - strand, within Dsui_1459 at 1518.457 kb on - strand, within Dsui_1459 at 1518.560 kb on - strand, within Dsui_1459 at 1518.651 kb on + strand, within Dsui_1459 at 1518.689 kb on - strand, within Dsui_1459 at 1518.769 kb on + strand, within Dsui_1459 at 1518.777 kb on - strand, within Dsui_1459 at 1518.833 kb on + strand, within Dsui_1459
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,516,385 - Dsui_1456 0.81 +0.7 1,516,432 + Dsui_1456 0.84 +0.7 1,516,541 + -0.3 1,516,541 + +1.3 1,516,559 - -1.9 1,516,667 + -2.3 1,516,809 - +0.7 1,516,882 + -0.0 1,516,887 + -1.8 1,517,071 + Dsui_1457 0.53 -0.2 1,517,164 - -0.3 1,517,318 + -1.6 1,517,386 + +0.7 1,517,407 + -1.9 1,517,424 + Dsui_1458 0.13 +0.7 1,517,467 - Dsui_1458 0.22 -0.6 1,517,490 + Dsui_1458 0.26 -0.3 1,517,574 + Dsui_1458 0.43 -0.3 1,517,584 + Dsui_1458 0.46 -1.3 1,517,585 + Dsui_1458 0.46 -1.6 1,517,635 + Dsui_1458 0.56 +0.7 1,517,668 + Dsui_1458 0.63 +0.7 1,517,676 - Dsui_1458 0.64 -0.3 1,517,691 - Dsui_1458 0.67 -3.1 1,517,704 + Dsui_1458 0.70 -0.3 1,517,928 - -0.7 1,517,991 - +0.7 1,518,337 - Dsui_1459 0.32 +0.2 1,518,457 - Dsui_1459 0.40 -0.9 1,518,560 - Dsui_1459 0.46 -0.7 1,518,651 + Dsui_1459 0.52 -0.9 1,518,689 - Dsui_1459 0.55 -0.7 1,518,769 + Dsui_1459 0.60 +0.7 1,518,777 - Dsui_1459 0.61 -0.7 1,518,833 + Dsui_1459 0.64 +0.7
Or see this region's nucleotide sequence