Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1407 and Dsui_1408 are separated by 134 nucleotides Dsui_1408 and Dsui_1409 are separated by 24 nucleotides
Dsui_1407: Dsui_1407 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,464,749 to 1,466,002
_1407
Dsui_1408: Dsui_1408 - NifZ domain-containing protein, at 1,466,137 to 1,466,406
_1408
Dsui_1409: Dsui_1409 - cation diffusion facilitator family transporter, at 1,466,431 to 1,467,318
_1409
Position (kb)
1466
1467 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1466.127 kb on + strand at 1466.142 kb on - strand at 1466.365 kb on + strand, within Dsui_1408 at 1466.384 kb on - strand at 1466.429 kb on + strand at 1466.436 kb on - strand at 1466.492 kb on - strand at 1466.504 kb on + strand at 1466.512 kb on - strand at 1466.531 kb on + strand, within Dsui_1409 at 1466.586 kb on + strand at 1466.631 kb on + strand, within Dsui_1409 at 1466.700 kb on + strand at 1466.714 kb on + strand, within Dsui_1409 at 1466.811 kb on + strand at 1466.819 kb on - strand, within Dsui_1409 at 1466.985 kb on - strand, within Dsui_1409 at 1467.106 kb on - strand, within Dsui_1409 at 1467.134 kb on - strand, within Dsui_1409 at 1467.152 kb on + strand, within Dsui_1409 at 1467.160 kb on - strand, within Dsui_1409 at 1467.244 kb on + strand at 1467.322 kb on - strand at 1467.324 kb on + strand at 1467.324 kb on + strand at 1467.324 kb on + strand at 1467.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,466,127 + +0.6 1,466,142 - -1.4 1,466,365 + Dsui_1408 0.84 -2.4 1,466,384 - -1.7 1,466,429 + -1.4 1,466,436 - -2.0 1,466,492 - -3.1 1,466,504 + -1.7 1,466,512 - -1.0 1,466,531 + Dsui_1409 0.11 -1.0 1,466,586 + +0.6 1,466,631 + Dsui_1409 0.23 -1.0 1,466,700 + +0.6 1,466,714 + Dsui_1409 0.32 -1.0 1,466,811 + +0.6 1,466,819 - Dsui_1409 0.44 -0.4 1,466,985 - Dsui_1409 0.62 -1.0 1,467,106 - Dsui_1409 0.76 +0.6 1,467,134 - Dsui_1409 0.79 -1.4 1,467,152 + Dsui_1409 0.81 -0.4 1,467,160 - Dsui_1409 0.82 -0.6 1,467,244 + +0.6 1,467,322 - -0.4 1,467,324 + +0.6 1,467,324 + +0.6 1,467,324 + -2.8 1,467,332 - -1.7
Or see this region's nucleotide sequence