Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1404 and Dsui_1405 overlap by 4 nucleotides Dsui_1405 and Dsui_1406 are separated by 3 nucleotides Dsui_1406 and Dsui_1407 overlap by 8 nucleotides Dsui_1407 and Dsui_1408 are separated by 134 nucleotides Dsui_1408 and Dsui_1409 are separated by 24 nucleotides
Dsui_1404: Dsui_1404 - ABC-type multidrug transport system, ATPase component, at 1,462,832 to 1,463,755
_1404
Dsui_1405: Dsui_1405 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 1,463,752 to 1,464,507
_1405
Dsui_1406: Dsui_1406 - putative transcriptional regulator, BolA superfamily, at 1,464,511 to 1,464,756
_1406
Dsui_1407: Dsui_1407 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,464,749 to 1,466,002
_1407
Dsui_1408: Dsui_1408 - NifZ domain-containing protein, at 1,466,137 to 1,466,406
_1408
Dsui_1409: Dsui_1409 - cation diffusion facilitator family transporter, at 1,466,431 to 1,467,318
_1409
Position (kb)
1464
1465
1466
1467 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1463.888 kb on + strand, within Dsui_1405 at 1463.942 kb on + strand, within Dsui_1405 at 1464.081 kb on - strand, within Dsui_1405 at 1464.153 kb on + strand, within Dsui_1405 at 1464.241 kb on - strand, within Dsui_1405 at 1464.305 kb on - strand, within Dsui_1405 at 1464.307 kb on + strand, within Dsui_1405 at 1464.329 kb on + strand, within Dsui_1405 at 1464.331 kb on - strand, within Dsui_1405 at 1464.374 kb on - strand at 1464.467 kb on + strand at 1464.467 kb on + strand at 1466.127 kb on + strand at 1466.142 kb on - strand at 1466.365 kb on + strand, within Dsui_1408 at 1466.384 kb on - strand at 1466.429 kb on + strand at 1466.436 kb on - strand at 1466.492 kb on - strand at 1466.504 kb on + strand at 1466.512 kb on - strand at 1466.531 kb on + strand, within Dsui_1409 at 1466.586 kb on + strand at 1466.631 kb on + strand, within Dsui_1409 at 1466.700 kb on + strand at 1466.714 kb on + strand, within Dsui_1409 at 1466.811 kb on + strand at 1466.819 kb on - strand, within Dsui_1409 at 1466.985 kb on - strand, within Dsui_1409
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,463,888 + Dsui_1405 0.18 -0.2 1,463,942 + Dsui_1405 0.25 -0.2 1,464,081 - Dsui_1405 0.44 +0.6 1,464,153 + Dsui_1405 0.53 -0.4 1,464,241 - Dsui_1405 0.65 +0.6 1,464,305 - Dsui_1405 0.73 +0.6 1,464,307 + Dsui_1405 0.73 -0.8 1,464,329 + Dsui_1405 0.76 -0.8 1,464,331 - Dsui_1405 0.77 -0.4 1,464,374 - -0.4 1,464,467 + -0.1 1,464,467 + -2.0 1,466,127 + +0.6 1,466,142 - -1.4 1,466,365 + Dsui_1408 0.84 -2.4 1,466,384 - -1.7 1,466,429 + -1.4 1,466,436 - -2.0 1,466,492 - -3.1 1,466,504 + -1.7 1,466,512 - -1.0 1,466,531 + Dsui_1409 0.11 -1.0 1,466,586 + +0.6 1,466,631 + Dsui_1409 0.23 -1.0 1,466,700 + +0.6 1,466,714 + Dsui_1409 0.32 -1.0 1,466,811 + +0.6 1,466,819 - Dsui_1409 0.44 -0.4 1,466,985 - Dsui_1409 0.62 -1.0
Or see this region's nucleotide sequence