Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1383 and Dsui_1384 are separated by 45 nucleotides Dsui_1384 and Dsui_1385 are separated by 168 nucleotides
Dsui_1383: Dsui_1383 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 1,438,149 to 1,440,116
_1383
Dsui_1384: Dsui_1384 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,440,162 to 1,440,839
_1384
Dsui_1385: Dsui_1385 - hypothetical protein, at 1,441,008 to 1,442,711
_1385
Position (kb)
1440
1441 Strain fitness (log2 ratio)
-2
-1
0
1 at 1439.190 kb on - strand at 1439.226 kb on + strand, within Dsui_1383 at 1439.364 kb on - strand at 1439.445 kb on + strand, within Dsui_1383 at 1439.453 kb on - strand, within Dsui_1383 at 1439.476 kb on - strand, within Dsui_1383 at 1439.509 kb on - strand, within Dsui_1383 at 1439.604 kb on + strand, within Dsui_1383 at 1439.656 kb on + strand, within Dsui_1383 at 1439.676 kb on + strand, within Dsui_1383 at 1439.688 kb on - strand, within Dsui_1383 at 1439.734 kb on - strand, within Dsui_1383 at 1439.780 kb on - strand at 1439.949 kb on - strand at 1439.949 kb on - strand at 1439.978 kb on + strand at 1440.088 kb on + strand at 1440.104 kb on + strand at 1440.112 kb on - strand at 1440.189 kb on - strand at 1440.549 kb on - strand, within Dsui_1384 at 1440.580 kb on - strand, within Dsui_1384 at 1440.697 kb on + strand, within Dsui_1384 at 1440.697 kb on + strand, within Dsui_1384 at 1440.697 kb on + strand, within Dsui_1384 at 1440.705 kb on - strand, within Dsui_1384 at 1440.705 kb on - strand, within Dsui_1384 at 1440.813 kb on + strand at 1440.887 kb on + strand at 1440.926 kb on - strand at 1441.024 kb on + strand at 1441.106 kb on - strand at 1441.111 kb on - strand at 1441.213 kb on - strand, within Dsui_1385 at 1441.286 kb on + strand, within Dsui_1385 at 1441.597 kb on + strand, within Dsui_1385 at 1441.638 kb on - strand, within Dsui_1385 at 1441.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,439,190 - +0.6 1,439,226 + Dsui_1383 0.55 -0.0 1,439,364 - +0.6 1,439,445 + Dsui_1383 0.66 -0.3 1,439,453 - Dsui_1383 0.66 -2.7 1,439,476 - Dsui_1383 0.67 -1.0 1,439,509 - Dsui_1383 0.69 +0.6 1,439,604 + Dsui_1383 0.74 -0.5 1,439,656 + Dsui_1383 0.77 -0.6 1,439,676 + Dsui_1383 0.78 -0.1 1,439,688 - Dsui_1383 0.78 +0.6 1,439,734 - Dsui_1383 0.81 +0.6 1,439,780 - +0.6 1,439,949 - -0.4 1,439,949 - -1.0 1,439,978 + -0.4 1,440,088 + -0.3 1,440,104 + -0.2 1,440,112 - -0.4 1,440,189 - -1.1 1,440,549 - Dsui_1384 0.57 -0.1 1,440,580 - Dsui_1384 0.62 +0.4 1,440,697 + Dsui_1384 0.79 -0.4 1,440,697 + Dsui_1384 0.79 +0.6 1,440,697 + Dsui_1384 0.79 +0.6 1,440,705 - Dsui_1384 0.80 +0.8 1,440,705 - Dsui_1384 0.80 -0.3 1,440,813 + +0.6 1,440,887 + -1.7 1,440,926 - -0.2 1,441,024 + +0.8 1,441,106 - +0.6 1,441,111 - +0.6 1,441,213 - Dsui_1385 0.12 -2.0 1,441,286 + Dsui_1385 0.16 -1.0 1,441,597 + Dsui_1385 0.35 -1.0 1,441,638 - Dsui_1385 0.37 -0.4 1,441,704 - +1.6
Or see this region's nucleotide sequence