Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1353 and Dsui_1354 overlap by 4 nucleotides Dsui_1354 and Dsui_1355 are separated by 177 nucleotides Dsui_1355 and Dsui_1356 overlap by 109 nucleotides Dsui_1356 and Dsui_1357 are separated by 30 nucleotides
Dsui_1353: Dsui_1353 - flagellar capping protein, at 1,408,927 to 1,409,817
_1353
Dsui_1354: Dsui_1354 - transcriptional regulator with HTH domain and aminotransferase domain, at 1,409,814 to 1,411,253
_1354
Dsui_1355: Dsui_1355 - hypothetical protein, at 1,411,431 to 1,411,871
_1355
Dsui_1356: Dsui_1356 - hypothetical protein, at 1,411,763 to 1,412,128
_1356
Dsui_1357: Dsui_1357 - hypothetical protein, at 1,412,159 to 1,412,290
_1357
Position (kb)
1409
1410
1411
1412 Strain fitness (log2 ratio)
-2
-1
0
1 at 1408.836 kb on + strand at 1408.921 kb on + strand at 1409.000 kb on + strand at 1409.008 kb on - strand at 1409.103 kb on + strand, within Dsui_1353 at 1409.139 kb on + strand at 1409.156 kb on + strand, within Dsui_1353 at 1409.230 kb on - strand, within Dsui_1353 at 1409.273 kb on + strand, within Dsui_1353 at 1409.278 kb on + strand, within Dsui_1353 at 1409.286 kb on - strand, within Dsui_1353 at 1409.297 kb on - strand at 1409.388 kb on + strand, within Dsui_1353 at 1409.438 kb on + strand, within Dsui_1353 at 1409.539 kb on + strand, within Dsui_1353 at 1409.610 kb on + strand, within Dsui_1353 at 1409.610 kb on - strand, within Dsui_1353 at 1409.610 kb on - strand, within Dsui_1353 at 1409.649 kb on - strand, within Dsui_1353 at 1409.684 kb on + strand, within Dsui_1353 at 1409.756 kb on + strand at 1409.819 kb on - strand at 1409.894 kb on + strand at 1409.920 kb on + strand at 1409.925 kb on + strand at 1409.949 kb on + strand at 1409.970 kb on - strand, within Dsui_1354 at 1410.012 kb on + strand, within Dsui_1354 at 1410.025 kb on + strand, within Dsui_1354 at 1410.028 kb on - strand, within Dsui_1354 at 1410.031 kb on + strand, within Dsui_1354 at 1410.031 kb on + strand, within Dsui_1354 at 1410.090 kb on - strand, within Dsui_1354 at 1410.093 kb on - strand, within Dsui_1354 at 1410.131 kb on + strand, within Dsui_1354 at 1410.148 kb on - strand, within Dsui_1354 at 1410.255 kb on - strand, within Dsui_1354 at 1410.320 kb on + strand, within Dsui_1354 at 1410.365 kb on - strand, within Dsui_1354 at 1410.548 kb on + strand, within Dsui_1354 at 1410.556 kb on - strand, within Dsui_1354 at 1410.587 kb on + strand, within Dsui_1354 at 1410.587 kb on + strand at 1410.595 kb on - strand, within Dsui_1354 at 1410.595 kb on - strand, within Dsui_1354 at 1410.682 kb on - strand, within Dsui_1354 at 1410.707 kb on - strand, within Dsui_1354 at 1410.757 kb on - strand, within Dsui_1354 at 1410.860 kb on - strand, within Dsui_1354 at 1410.883 kb on - strand, within Dsui_1354 at 1411.124 kb on + strand at 1411.132 kb on - strand at 1411.243 kb on - strand at 1411.256 kb on - strand at 1411.295 kb on - strand at 1411.319 kb on - strand at 1411.386 kb on - strand at 1411.395 kb on + strand at 1411.582 kb on - strand, within Dsui_1355 at 1411.634 kb on + strand, within Dsui_1355 at 1411.713 kb on - strand at 1411.750 kb on - strand at 1411.930 kb on - strand at 1411.982 kb on + strand, within Dsui_1356 at 1411.990 kb on - strand at 1412.054 kb on - strand, within Dsui_1356 at 1412.131 kb on - strand at 1412.149 kb on + strand at 1412.157 kb on - strand at 1412.216 kb on + strand, within Dsui_1357 at 1412.239 kb on + strand, within Dsui_1357 at 1412.253 kb on - strand, within Dsui_1357
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,408,836 + +0.6 1,408,921 + -1.4 1,409,000 + -2.0 1,409,008 - +0.6 1,409,103 + Dsui_1353 0.20 +0.6 1,409,139 + +0.6 1,409,156 + Dsui_1353 0.26 -1.7 1,409,230 - Dsui_1353 0.34 -2.6 1,409,273 + Dsui_1353 0.39 -0.4 1,409,278 + Dsui_1353 0.39 -0.4 1,409,286 - Dsui_1353 0.40 -1.0 1,409,297 - +0.6 1,409,388 + Dsui_1353 0.52 -1.0 1,409,438 + Dsui_1353 0.57 +0.6 1,409,539 + Dsui_1353 0.69 -1.7 1,409,610 + Dsui_1353 0.77 -1.0 1,409,610 - Dsui_1353 0.77 -1.0 1,409,610 - Dsui_1353 0.77 +0.6 1,409,649 - Dsui_1353 0.81 +0.6 1,409,684 + Dsui_1353 0.85 -0.4 1,409,756 + -0.4 1,409,819 - -0.4 1,409,894 + -1.7 1,409,920 + +0.6 1,409,925 + -1.4 1,409,949 + -2.0 1,409,970 - Dsui_1354 0.11 -1.0 1,410,012 + Dsui_1354 0.14 -0.4 1,410,025 + Dsui_1354 0.15 +0.6 1,410,028 - Dsui_1354 0.15 -1.1 1,410,031 + Dsui_1354 0.15 -0.4 1,410,031 + Dsui_1354 0.15 -1.4 1,410,090 - Dsui_1354 0.19 -0.5 1,410,093 - Dsui_1354 0.19 -1.7 1,410,131 + Dsui_1354 0.22 -1.4 1,410,148 - Dsui_1354 0.23 -1.4 1,410,255 - Dsui_1354 0.31 -0.6 1,410,320 + Dsui_1354 0.35 -0.4 1,410,365 - Dsui_1354 0.38 -0.7 1,410,548 + Dsui_1354 0.51 -1.0 1,410,556 - Dsui_1354 0.52 -1.1 1,410,587 + Dsui_1354 0.54 +1.6 1,410,587 + +0.6 1,410,595 - Dsui_1354 0.54 -0.1 1,410,595 - Dsui_1354 0.54 -0.9 1,410,682 - Dsui_1354 0.60 -1.7 1,410,707 - Dsui_1354 0.62 -0.9 1,410,757 - Dsui_1354 0.65 -1.7 1,410,860 - Dsui_1354 0.73 -0.8 1,410,883 - Dsui_1354 0.74 -1.0 1,411,124 + +0.6 1,411,132 - -1.2 1,411,243 - -0.0 1,411,256 - -1.0 1,411,295 - -0.4 1,411,319 - -1.0 1,411,386 - -1.4 1,411,395 + -1.0 1,411,582 - Dsui_1355 0.34 -0.4 1,411,634 + Dsui_1355 0.46 -1.0 1,411,713 - +0.6 1,411,750 - -0.4 1,411,930 - +0.6 1,411,982 + Dsui_1356 0.60 -0.4 1,411,990 - +0.6 1,412,054 - Dsui_1356 0.80 -2.2 1,412,131 - -1.4 1,412,149 + +0.2 1,412,157 - +0.6 1,412,216 + Dsui_1357 0.43 -0.2 1,412,239 + Dsui_1357 0.61 -0.2 1,412,253 - Dsui_1357 0.71 -1.0
Or see this region's nucleotide sequence